PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WYE3R
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 282aa    MW: 32389.8 Da    PI: 6.3642
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WYE3RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.35.7e-14146234189
         FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                  ++YneY++  GFs+r+sk  ++     ngei+++ fvCs e  +  +  +  ++  +++ tr+gC+a++kv+ +     +v+++  + nH +
  Araip.WYE3R 146 DYYNEYGRIKGFSMRRSKVGQRtkqGSNGEIIWKIFVCSSERGNICSGGD--RKMDPQPITRCGCEAQIKVHVD-GTSGYVEQFCDNQNHVM 234
                  69*************98765443337899***************999988..999******************9.77778999999999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-11146234IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEDMWQLTTQ IHSVDNLIYG LIMSPKPWQR YAPEIGFSWG IVPSWWFRSD DKFHVAIFML  60
TGFAERSYKV SSPCATRVRE DGMSSDTIPM EETEAMSLSK GDAEIEVEEL AMIVDGIGSF  120
NAIDFAALTA KDILMIEFIN LQAAYDYYNE YGRIKGFSMR RSKVGQRTKQ GSNGEIIWKI  180
FVCSSERGNI CSGGDRKMDP QPITRCGCEA QIKVHVDGTS GYVEQFCDNQ NHVMLDVRFR  240
GLMRSHRQSR KESWLASAND IPRFFQPVRG FRDYWVRDKG YL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.WYE3R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016199697.15e-77protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Z4346e-75A0A444Z434_ARAHY; Uncharacterized protein
TrEMBLA0A445A1582e-72A0A445A158_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-08FAR1-related sequence 5