PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.X1ZFJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 130aa    MW: 15307.6 Da    PI: 10.4316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.X1ZFJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-06628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+k F r  nL+ H r H
  Araip.X1ZFJ  6 FVCEVCNKGFQREQNLQLHRRGH 28
                 89*******************88 PP
2zf-C2H2157.4e-0583105123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Araip.X1ZFJ  83 WKCHKCSKKYAVQSDWKAHSKTC 105
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.1E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.094628IPR007087Zinc finger, C2H2
SMARTSM003550.0041628IPR015880Zinc finger, C2H2-like
PfamPF121715.1E-6628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003552304878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-778103No hitNo description
SMARTSM0035514083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPN KEPKRKVYLC PEPTCVHHHP  60
SRALGDLTGI KKHFSRKHGE KKWKCHKCSK KYAVQSDWKA HSKTCGTKEY RCDCGTLFSR  120
THNISHEKDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-2279126351Zinc finger protein JACKDAW
5b3h_F5e-2279126351Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.X1ZFJ
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1156871e-49AC115687.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence.
GenBankAC1164261e-49AC116426.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence.
GenBankAP0149591e-49AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-49CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946932.11e-85protein indeterminate-domain 5, chloroplastic
RefseqXP_016181115.11e-85protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_020968622.11e-85protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_020968623.16e-86protein indeterminate-domain 5, chloroplastic isoform X2
RefseqXP_020988184.11e-85protein indeterminate-domain 5, chloroplastic
RefseqXP_025624986.11e-85protein indeterminate-domain 5, chloroplastic
RefseqXP_025624987.11e-85protein indeterminate-domain 5, chloroplastic
RefseqXP_025624988.11e-85protein indeterminate-domain 5, chloroplastic
SwissprotQ8GYC13e-76IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A3Q7YAH13e-78A0A3Q7YAH1_CICAR; protein indeterminate-domain 4, chloroplastic-like isoform X2
STRINGXP_004496222.11e-78(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.28e-69indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]