PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.X366D

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SBP

Protein Properties

Length: 233aa MW: 25159.2 Da PI: 7.7888

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.X366D	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	70.7	2.8e-22	149	195	1	47
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs 47 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv + +qrfCqqCs Araip.X366D 149 VCQVEDCGADLSSAKDYHRRHKVCEMHSKATKALVGNAMQRFCQQCS 195 6*********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.6E-23	143	195	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	17.375	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-21	148	202	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.5E-16	150	195	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEARFGTEAL QFYAMGGSSV GKRSMEWDLN DWKWDGDLFI ARPLNPGPEH RQFFPAGTRI 60 PVAGGPSNSN SSSSCSDEVD LGIRGGNKEG DKKRRVVVLE DDALNEESGT LSLKLGGGVG 120 GHGGAQIGSW EGVNGKKSRV AGGNSNRAVC QVEDCGADLS SAKDYHRRHK VCEMHSKATK 180 ALVGNAMQRF CQQCSFTCSK SLMKEREAVE DVWQATISGG GKQTTMLFLM QLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	3e-22	150	195	6	51	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.X366D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF312231	0.0	KF312231.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015968830.1	1e-136	squamosa promoter-binding-like protein 1
Refseq	XP_015968831.1	1e-136	squamosa promoter-binding-like protein 1
Refseq	XP_016205699.1	1e-136	squamosa promoter-binding-like protein 1
Refseq	XP_025603902.1	1e-136	squamosa promoter-binding-like protein 1
Refseq	XP_025661435.1	1e-136	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	2e-39	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0K0KBI1	1e-134	A0A0K0KBI1_ARAHY; Squamosa promoter-binding-like protein
TrEMBL	A0A444YIZ8	1e-134	A0A444YIZ8_ARAHY; Uncharacterized protein
TrEMBL	A0A445CMW3	1e-134	A0A445CMW3_ARAHY; Uncharacterized protein
STRING	XP_007145109.1	2e-87	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-37	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]