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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.X63FE | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 153aa MW: 17491.3 Da PI: 9.2413 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 25.7 | 3.7e-08 | 11 | 81 | 19 | 91 |
FAR1 19 skkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
++++++ ++i+++ vC +eg+ +++ + + +t+++ +C ak+ v +k + w ++k+ l+H+ +++p
Araip.X63FE 11 KNTTRDGDKIKNQLIVCLREGRWKSKISP---TLKTNPSAGLNCPAKIYVLIMKdVSLWTISKVILNHSYPCCP 81
344567778888889*******9998776...999***************9999899***********998875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 8.2E-6 | 8 | 81 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 153 aa Download sequence Send to blast |
MIFKTLEEAG KNTTRDGDKI KNQLIVCLRE GRWKSKISPT LKTNPSAGLN CPAKIYVLIM 60 KDVSLWTISK VILNHSYPCC PDQAKMLKQH RELSMFVRRT IETHEEAGIR SSKTYQSFMV 120 AAGSHRELAC TVFGSPDLIV SVWYTELYED RHI |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.X63FE |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016177749.1 | 5e-77 | uncharacterized protein LOC107620038 | ||||
| TrEMBL | A0A445EJ10 | 1e-76 | A0A445EJ10_ARAHY; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF21 | 14 | 477 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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