PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.XB1GI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 269aa    MW: 30704 Da    PI: 9.6281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.XB1GIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-06628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Araip.XB1GI  6 FVCEICKKGFQREQNLQLHRRGH 28
                 89*******************88 PP
2zf-C2H2110.001384105223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  kC++C+k +  +s+ k H + +
  Araip.XB1GI  84 KCEKCSKKYAVHSDWKAHTKIC 105
                  8*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.11E-7528No hitNo description
Gene3DG3DSA:3.30.160.602.8E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.762628IPR007087Zinc finger, C2H2
PfamPF121714.9E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0079628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551704878IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.11E-778103No hitNo description
SMARTSM0035515083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MATNRFVCEI CKKGFQREQN LQLHRRGHNL PWKLRQREKE EVVRKKVYVC PEKSCVHHES  60
CRALGDLTGI KKHYSRKHGE KKLKCEKCSK KYAVHSDWKA HTKICGTREY RCHCGTLFSR  120
KDSFLTHRSF CQALPQPINS QFHTASSMAP PSLPLWLDQT INQDNKLGDL FYSSSSSSTL  180
MSATALLQKA TQMESTPIAS NNDNNAFVGF MLSSSSQFSS FNNDSNLMQH PLGLTRDFLG  240
VGVTTRFMNN PMGSLVDLQT NPLHHQEYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-2979136360Zinc finger protein JACKDAW
5b3h_F7e-2979136360Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13445RQREKEEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
UniProtTranscription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.XB1GI
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169909.10.0protein indeterminate-domain 9
RefseqXP_025669365.10.0zinc finger protein BALDIBIS
RefseqXP_025669366.10.0zinc finger protein BALDIBIS
RefseqXP_025669368.10.0zinc finger protein BALDIBIS
RefseqXP_025669369.10.0zinc finger protein BALDIBIS
SwissprotO227592e-83IDD12_ARATH; Protein indeterminate-domain 12
SwissprotQ700D25e-83IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A444Y7X10.0A0A444Y7X1_ARAHY; Uncharacterized protein
STRINGGSMUA_Achr2P08910_0017e-90(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-66C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Hirano Y, et al.
    Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.
    Nat Plants, 2017. 3: p. 17010
    [PMID:28211915]
  3. Kobayashi A,Miura S,Kozaki A
    INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves.
    Plant Mol. Biol., 2017. 94(1-2): p. 1-13
    [PMID:28324206]
  4. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]
  5. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]