PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.XFX9Y
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 215aa    MW: 24939.1 Da    PI: 10.3327
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.XFX9YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-0627411226
                 TS--TTTTT-SS-SS CS
      zf-CCCH 12 tGtCkyGdrCkFaHg 26
                   +C yG+rC+F+H+
  Araip.XFX9Y 27 AAFCGYGSRCRFNHP 41
                 569***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.50.1402.9E-947138IPR012340Nucleic acid-binding, OB-fold
SuperFamilySSF502498.57E-1148141IPR012340Nucleic acid-binding, OB-fold
CDDcd044801.12E-1850138No hitNo description
PfamPF027215.2E-1375169IPR003871Domain of unknown function DUF223
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
QRSLARTRPL QNQKAKYPEV RTVLLRAAFC GYGSRCRFNH PHDRATETWS IEAKILTIWE  60
DATIVNENMQ KLLHVVLMDK QHHKVQAIVE DDLITTFIHQ LKEGHIFIIS NFKVIPNGGL  120
VRVTRHRFRI LFKCSTSVVA TANRVIPNPG LSLTSMDEIL QKHTDYEYLI DINCLKKYQR  180
PPVLILQSFK IKVNRDKVSL QNVINVFRVS INPDM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.XFX9Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025625634.13e-95uncharacterized protein LOC112717929
TrEMBLA0A445EFD21e-100A0A445EFD2_ARAHY; Uncharacterized protein