PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.XJ3H8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 572aa    MW: 62903.4 Da    PI: 6.3334
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.XJ3H8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.4e-24127225299
                  EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                   k+lt+sd+++ g +++p+++a+ +      +   e + tl+++d++g +We+++iyr++++r+++t+GW++Fv+++++ +gD+vvF+  ++s+++++
  Araip.XJ3H8 127 AKILTRSDANNGGGFSVPRSCADLIfpplnfE---EDPPTLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFM--KDSDGRMF 219
                  599*******************888**97543...45568************************************************..779***** PP

                  EEEE-S CS
           B3  94 vkvfrk 99 
                  v+++r+
  Araip.XJ3H8 220 VGIRRN 225
                  ***996 PP
2Auxin_resp72.41.3e-24281366183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.sGtvvgvsdl.dpvrWpnSkWrsLk 83 
                  a++ a+++++FevvY+P++++ eFvvk+e+v   ++ + +svGmR+kma e+ dss+ ++ +Gtv+gv+   +   W++S+Wr+L+
  Araip.XJ3H8 281 AMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDVKMNgIFCSVGMRVKMARENYDSSRMTWfQGTVSGVTVPgEAQPWSGSPWRMLQ 366
                  678899*****************************978889***************************97525567********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-29120229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-25122226IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-19125224No hitNo description
SMARTSM010191.7E-18126226IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042126226IPR003340B3 DNA binding domain
PfamPF023622.5E-21127225IPR003340B3 DNA binding domain
PfamPF065071.0E-21281366IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MTRCSAPPSS SPPRPTPIPA KFWRACAGIS AQAPVVNSRV YYFPQGHIDQ AASQPRNLSP  60
LVYSRPVIPC RVAAVNFFAD PKTDEVFLKI LLLPVTDGSA QDFLPPAVAA EGSGNGNGDD  120
EKVESYAKIL TRSDANNGGG FSVPRSCADL IFPPLNFEED PPTLRITDLH GAVWEFRHIY  180
RGTPRRHLFT SGWSKFVNSK KIISGDTVVF MKDSDGRMFV GIRRNMSSDD GISDGGLDWL  240
ATIVGMDEGE KEKEEKNEEV IMEGFARNGK GRVSSASVAE AMELAAQNKP FEVVYYPSVG  300
WGEFVVKAED VDVKMNGIFC SVGMRVKMAR ENYDSSRMTW FQGTVSGVTV PGEAQPWSGS  360
PWRMLQITWD ESEILKNVSP VSPWQVEFLS DTPSLPQVFP PTKKFRIADG SSKIFSHEVE  420
ESSFSMTRLA IPDLAMGVLN QTLLMSNYGT PFPASIQGVR HPLLSAPTCP IFPINPPLSI  480
ANSFKNNIRP RLNAMLPEPN INTHKPESLS PHNKSSLTPN SNSTKSGTAS FQLFGCTIQT  540
DQEIDDQLMT IAPLKMTQEK TTYNRGIDKP IT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-591838751388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.XJ3H8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025636272.10.0auxin response factor 17-like
TrEMBLA0A445AKC10.0A0A445AKC1_ARAHY; Auxin response factor
STRINGXP_004515659.11e-165(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-127auxin response factor 17