PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.XL5H0
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 458aa    MW: 51072.5 Da    PI: 7.6975
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.XL5H0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.2e-192672148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+++v+ v ++G+  W++Ia+ ++ gR +kqc++rw+++l
      Araip.XL5H0 26 KGPWTKEEDDKIVEMVSKYGPSKWSLIAKSLP-GRIGKQCRERWHNHL 72
                     79******************************.*************97 PP
2Myb_DNA-binding53.36.4e-1778121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++W+ eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
      Araip.XL5H0  78 KDAWSSEEELALMNAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 121
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.646120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-8230IPR009057Homeodomain-like
PROSITE profilePS5129432.0092176IPR017930Myb domain
SuperFamilySSF466894.87E-3223119IPR009057Homeodomain-like
SMARTSM007173.6E-182574IPR001005SANT/Myb domain
PfamPF002494.2E-182672IPR001005SANT/Myb domain
CDDcd001672.93E-162872No hitNo description
Gene3DG3DSA:1.10.10.604.6E-283179IPR009057Homeodomain-like
PROSITE profilePS5129422.00577127IPR017930Myb domain
SMARTSM007174.7E-1677125IPR001005SANT/Myb domain
PfamPF002495.3E-1578121IPR001005SANT/Myb domain
CDDcd001672.92E-1280123No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2380127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
AEFFPDRSEV QCLHRWQKVL NPELVKGPWT KEEDDKIVEM VSKYGPSKWS LIAKSLPGRI  60
GKQCRERWHN HLNPDIKKDA WSSEEELALM NAHRIYGNKW AEIAKVLPGR TDNAIKNHWN  120
SSLKKKMDFY LATGRLPPTL KNSPQVVVKD TVRHSKPTLF VCSNKESDTA VESSSETTEI  180
TQLYSSDKKD KNRLECLVTV GDSSGAPLVN ESVDTECKAG SSNINLSCND SELVSRDNFQ  240
VHSIKNSENP GLVGKPNESC RDNAKMSNNR FCRTCFSHET PVSGSLCYEP PQLDFSVPLD  300
SLYSNILHEQ NDCSSPIASS VGFFSPLGVN GSENVTPESI LKMAAKTFPS TPSIMRKRRT  360
VSQAHVTPSK ALKADIDSQT SKVQERSKDN SDSIVGSDII NNNKDFNASP PYRLRPKRTA  420
VVKSIEKQLE FAFEKEKDDS GMHKVQEGIL IGLALEAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-65112733159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-65112733159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359MRKRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.XL5H0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025633444.10.0transcription factor MYB3R-3
RefseqXP_025633445.10.0transcription factor MYB3R-3
RefseqXP_025633446.10.0transcription factor MYB3R-3
TrEMBLA0A445EC010.0A0A445EC01_ARAHY; Uncharacterized protein
STRINGGLYMA18G39740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-116myb domain protein 3r-5