PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.XN0TT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26706.7 Da    PI: 9.8602
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.XN0TTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.96.3e-193568134
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
                 k i+n + rqvtfskRr gi+KKA+ELSvLCdae
  Araip.XN0TT 35 KMIDNITARQVTFSKRRRGIFKKAQELSVLCDAE 68
                 679*****************************97 PP
2K-box50.49.4e-18941751899
        K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  + + +kL+ke+    +++R+++Ged + L+l++L qLe++L+++l+++ ++K++ +++ i  lqkk  el++enk+L++k++
  Araip.XN0TT  94 NVNNDKLRKEVADKTHQLRQMKGEDFQGLNLQDLLQLEKALQTGLNRVIETKEKRIMDDIAALQKKGAELEQENKKLKQKMD 175
                  456689*************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.83E-182768IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-212787IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.3062768IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-132949IPR002100Transcription factor, MADS-box
PfamPF003191.5E-153768IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-134964IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.6390180IPR002487Transcription factor, K-box
PfamPF014862.6E-1596174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
KGETSLSFLE IQKQHSRVTS KHKRLKMVRQ KIKIKMIDNI TARQVTFSKR RRGIFKKAQE  60
LSVLCDAEDI TARYAQHTHE ISRSERPLEL QLENVNNDKL RKEVADKTHQ LRQMKGEDFQ  120
GLNLQDLLQL EKALQTGLNR VIETKEKRIM DDIAALQKKG AELEQENKKL KQKMDMVKMG  180
KSPLVMDSSD IGMQEVVSSE SLNNACSCIS SAAPSSLEDD SSDTSLKLGL PFPNN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18466303, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.XN0TT
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by vernalization in a FLC-independent manner. Repressed by the floral homeotic genes AP1, LFY and SEP3 in emerging floral meristems to establish a floral identity and prevent inflorescence fate. Up-regulated at the shoot apex by SOC1. {ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18694458}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016167140.11e-147MADS-box protein AGL24 isoform X1
RefseqXP_025667194.11e-147MADS-box protein AGL24 isoform X1
SwissprotO827942e-56AGL24_ARATH; MADS-box protein AGL24
TrEMBLA0A445CGJ31e-108A0A445CGJ3_ARAHY; Uncharacterized protein
STRINGVIT_18s0001g07460.t014e-76(Vitis vinifera)
STRINGXP_004490446.13e-77(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.23e-47MIKC_MADS family protein
Publications ? help Back to Top
  1. Ramamoorthy R,Phua EE,Lim SH,Tan HT,Kumar PP
    Identification and characterization of RcMADS1, an AGL24 ortholog from the holoparasitic plant Rafflesia cantleyi Solms-Laubach (Rafflesiaceae).
    PLoS ONE, 2013. 8(6): p. e67243
    [PMID:23840638]
  2. Lei HJ, et al.
    Identification and characterization of FaSOC1, a homolog of SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 from strawberry.
    Gene, 2013. 531(2): p. 158-67
    [PMID:24055423]
  3. Wells CE,Vendramin E,Jimenez Tarodo S,Verde I,Bielenberg DG
    A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch].
    BMC Plant Biol., 2015. 15: p. 41
    [PMID:25848674]
  4. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]
  5. Sun LM,Zhang JZ,Hu CG
    Characterization and Expression Analysis of PtAGL24, a SHORT VEGETATIVE PHASE/AGAMOUS-LIKE 24 (SVP/AGL24)-Type MADS-Box Gene from Trifoliate Orange (Poncirus trifoliata L. Raf.).
    Front Plant Sci, 2016. 7: p. 823
    [PMID:27375669]