PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.XS1F4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 259aa    MW: 29798.7 Da    PI: 5.2693
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.XS1F4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.11.1e-2691180290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn+Y++  GF  r+ k+ ++ + gei+++tfvC+++g+re++  +  +++r+++++tr+gC a++++k+++ +g+w+v+++++eHnHela
  Araip.XS1F4  91 FYNNYSRLKGFASRRGKTVRN-TAGEIVRYTFVCNRQGFREKKWLEkVDRKREHKVVTRCGCMAEMRIKRKDgSGRWYVSRFVEEHNHELA 180
                  9****************9998.8888***************997664678888999*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-2491180IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDDVIMASSS KFWKDAYMWN EPLADYWMEG NAGMSNPQDT MFDTRVEEDA ELSDWEGRGA  60
SMLPGFLGLD GLRAEDVLEM EFSSPQEAGG FYNNYSRLKG FASRRGKTVR NTAGEIVRYT  120
FVCNRQGFRE KKWLEKVDRK REHKVVTRCG CMAEMRIKRK DGSGRWYVSR FVEEHNHELA  180
YGKLIDYLLS HRKISEVEVA QLTSMREIGI SIPKIYESFA AQLGGFNLVT FTKQDMCVDF  240
LRDTEDELDF HGTPGTPVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.XS1F4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020972904.11e-163protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444YHK41e-168A0A444YHK4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9185237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-24FAR1-related sequence 5