PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.XZ3D1

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 240aa MW: 27680.6 Da PI: 10.2884

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.XZ3D1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.1	2.6e-27	80	166	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGF vr+sk ++s+ +++ + r fvC+keg+r ++k++ + r+raetr+gCka+++v+k ++g w+vt++++eH H+l+ Araip.XZ3D1 80 FYNAYATSVGFIVRVSKLSRSRIDNSAIGRIFVCNKEGYRMTDKRE--NVIRQRAETRVGCKAMIMVRKIRSGSWVVTRFVKEHRHPLV 166 ****************************************9988..9999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-25	80	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
FWDSPKLTRS CSNLERRDIL GNTIHQFPDS KSQSFENLQE LTAGKVAANL KGPRSRIYSN 60 SPVEPYVGQE FELEAEAHAF YNAYATSVGF IVRVSKLSRS RIDNSAIGRI FVCNKEGYRM 120 TDKRENVIRQ RAETRVGCKA MIMVRKIRSG SWVVTRFVKE HRHPLVGPGG GRRDFIYEQY 180 PLTAEKKRSA TYKRHLELIL KHIDEYNESL SKKIQHIVDN VKKMVSKEEQ SQLNFQLATL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.XZ3D1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025679133.1	1e-147	protein FAR1-RELATED SEQUENCE 4-like
TrEMBL	A0A444YNU1	1e-146	A0A444YNU1_ARAHY; Uncharacterized protein
STRING	XP_007131945.1	2e-88	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-80	FAR1 family protein