PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Y26KW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 515aa    MW: 58102.8 Da    PI: 7.7505
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Y26KWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4362.7e-133945121374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+c ++v++g+ e a+ lL + s lasp+gd+mqR+aayfteALa r+++ +++l +al++++     +see+  +klf+e++P++k++++++
  Araip.Y26KW  94 LIHLLLTCGNHVAAGNIETANVLLGQSSMLASPEGDTMQRIAAYFTEALADRILKAWPGLHRALNSTRMV--MVSEEVLTRKLFYEIFPFMKIAFVLT 189
                  689*************************************************************998886..699999******************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI ea++ge+++HiiD+++ + +QW+aLlq L++Rpegpp+lRiTgv++    +ke l +++ rL + Ae+l++pf+fn+ v+++le+l++e++rv
  Araip.Y26KW 190 NQAIIEAMKGEKMIHIIDLNAIESAQWLALLQILSKRPEGPPHLRITGVHQ----KKEILDQIAYRLVEEAEKLDIPFQFNP-VVSKLESLDFEKFRV 282
                  ***************************************************....9**************************.799************ PP

         GRAS 197 kpgEalaVnlvlqlhrll....................................................desvsleserdevLklvkslsPkvvvvv 242
                  k+gEala+ ++lqlh+ll                                                    + ++s +++++++L+++ +lsPkv+vv+
  Araip.Y26KW 283 KSGEALAITSMLQLHSLLawdneaaqrrnpqlartsnaihrkrkqpmfqssssdlpentpspdssssspaSLTTSNSKHTESFLNALCGLSPKVMVVT 380
                  ******************************************************************998755666666999***************** PP

         GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                  eq+++hn+ ++++r+leal+ y+alfd+le +lpr+s er  +E++l+g+ei+n+vaceg errerhe+l kW +r+  aGF ++pls++ + qak+ 
  Araip.Y26KW 381 EQDSNHNGLTLMDRLLEALYSYAALFDCLECTLPRTSLERLRLEKMLFGEEIKNIVACEGLERRERHERLDKWIHRFYLAGFVNMPLSYFGTLQAKRF 478
                  ************************************************************************************************** PP

         GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  l+ ++ dgyr+ ee+g++++gW+drpL+svSaWr
  Araip.Y26KW 479 LQSYSCDGYRMREENGCVLIGWQDRPLFSVSAWR 512
                  *********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.12668492IPR005202Transcription factor GRAS
PfamPF035149.4E-13194512IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MVFGEGSSSS SRNCFRVLGI LSYIFCAELD SEFGVPWQVL KNKNQKVFTM QEEGSSSVTS  60
SPLQSVSTMS LSPSLGSPHP MPKELRSEER GLCLIHLLLT CGNHVAAGNI ETANVLLGQS  120
SMLASPEGDT MQRIAAYFTE ALADRILKAW PGLHRALNST RMVMVSEEVL TRKLFYEIFP  180
FMKIAFVLTN QAIIEAMKGE KMIHIIDLNA IESAQWLALL QILSKRPEGP PHLRITGVHQ  240
KKEILDQIAY RLVEEAEKLD IPFQFNPVVS KLESLDFEKF RVKSGEALAI TSMLQLHSLL  300
AWDNEAAQRR NPQLARTSNA IHRKRKQPMF QSSSSDLPEN TPSPDSSSSS PASLTTSNSK  360
HTESFLNALC GLSPKVMVVT EQDSNHNGLT LMDRLLEALY SYAALFDCLE CTLPRTSLER  420
LRLEKMLFGE EIKNIVACEG LERRERHERL DKWIHRFYLA GFVNMPLSYF GTLQAKRFLQ  480
SYSCDGYRMR EENGCVLIGW QDRPLFSVSA WRSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-64775141380Protein SCARECROW
5b3h_D3e-64775141380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Y26KW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187875.10.0scarecrow-like protein 3
RefseqXP_020973780.10.0scarecrow-like protein 3
RefseqXP_025642723.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A445A7K80.0A0A445A7K8_ARAHY; Uncharacterized protein
STRINGGLYMA11G10170.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]