PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Y70BU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 296aa    MW: 33209.1 Da    PI: 7.3048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Y70BUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l++ + ++G g+W++++ + g+ R +k+c++rw +yl
      Araip.Y70BU 15 KGLWSPEEDNKLKNHIVKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding50.45.2e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E+e ++ ++++lG++ W+ Ia+ ++ gRt++++k++w++yl
      Araip.Y70BU  68 RGLFSKQEEETILTLHQMLGNK-WSQIAQNLP-GRTDNEIKNYWHSYL 113
                      7889******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-22964IPR009057Homeodomain-like
PROSITE profilePS5129416.9431062IPR017930Myb domain
SuperFamilySSF466892.88E-2812109IPR009057Homeodomain-like
SMARTSM007179.6E-121464IPR001005SANT/Myb domain
PfamPF002492.5E-131562IPR001005SANT/Myb domain
CDDcd001671.56E-101862No hitNo description
PROSITE profilePS5129425.10563117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2565117IPR009057Homeodomain-like
SMARTSM007172.5E-1567115IPR001005SANT/Myb domain
PfamPF002495.8E-1568113IPR001005SANT/Myb domain
CDDcd001674.25E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGLQPLEKAK PKYKKGLWSP EEDNKLKNHI VKHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGL FSKQEEETIL TLHQMLGNKW SQIAQNLPGR TDNEIKNYWH SYLKKRVMSN  120
AKEMESNEQV QYATSSSETM DSSSHAVQNL ATQGKQNTYS FTNEACQSSP IPKLLFAEWL  180
TLDHVQCGGN SANSYDESLA LKNGFDSQIS SFQESATVHD PMSQGPFGGD YHNNSLAHSS  240
AEEMFNSQLK FGTTMVENGF IQCIPGVEFS ANFNMSNDTM YIYDNSIIST AAQNGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231111723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Y70BU
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174249.10.0transcription factor LAF1-like
RefseqXP_025679834.10.0transcription factor LAF1
SwissprotQ9M0K45e-60LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A444XW570.0A0A444XW57_ARAHY; Uncharacterized protein
STRINGGLYMA10G38110.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.12e-64myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]