PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Y9RDS
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 235aa    MW: 26389.1 Da    PI: 10.6862
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Y9RDSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.6e-18119153135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Araip.Y9RDS 119 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 153
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-17113163IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.36113149IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-16115177No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14117151IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.24E-13118165No hitNo description
PfamPF003207.3E-16119153IPR000679Zinc finger, GATA-type
PROSITE patternPS003440119144IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MQLISGMKRP NDDASSEAHK FRAEPNRKSP IFNSEVSVPA KARSKRSRVP PCNWTSRLLV  60
LSPTPTPTTS SSSEPDVMVP ISTPTPVSFT IPVTGKKPGK TTGRKKEGGD CGSGDGRKCL  120
HCATDKTPQW RTGPMGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTKH SNSHRKVLEL  180
RRQKEMMRAQ QHHHQHQQQF IQHHHHHQNM MFDVPTNADD YLIHQHVGPD FRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Y9RDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207805.11e-177GATA transcription factor 12-like
RefseqXP_025657496.11e-177GATA transcription factor 12-like
SwissprotP697812e-76GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A445CVT21e-140A0A445CVT2_ARAHY; GATA transcription factor
STRINGGorai.009G049300.14e-97(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-75GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]