PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.YAF9X

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 435aa MW: 48387.2 Da PI: 8.0689

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.YAF9X	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	258	312	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Araip.YAF9X 258 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRI 312 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.499	255	315	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-28	256	313	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.53E-17	256	312	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	258	313	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-8	262	311	IPR001005	SANT/Myb domain
Pfam	PF14379	6.8E-20	356	402	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MNENKLDFHS EYGNRSSCQY FGIRQQPWNM GPCNNQPLGA TCVSVGVGRG RGGGGGEQEV 60 VLPYSAQAKP SSTIISRFES PASAFYATEI FMGFPQYDSH QVGNPSNLMP HQLSIKNINN 120 DMEFPLYQSS KESLFFDSSV NDQNSPNNFE LPNTLQAIKS QLNGDQCNGS PEKSNKIPCG 180 NFPASNFLPI EQHKLFNDDA APVTRSISIP KANQESTVAC GSFNSPVQQL SFSSPQEKLS 240 PTISAGNLVG NGPIASSKTR IRWTQDLHEK FVECVNRLGG AEKATPKAIL RLMDSDGLTI 300 FHVKSHLQKY RIAKYMPEST QGSYALPKKY FFPFSGKSEK RTSAENVHLD VKAGLQIKEA 360 LQLQLDVQRR LHEQLEIQRK LQLQIEEQGK QLKMMFDRQQ KSNNSERSSK DNNNDDNEVT 420 ILEGTGISHF PSKIS

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MNENKLDFHS EYGNRSSCQY FGIRQQPWNM GPCNNQPLGA TCVSVGVGRG RGGGGGEQEV  60
VLPYSAQAKP SSTIISRFES PASAFYATEI FMGFPQYDSH QVGNPSNLMP HQLSIKNINN  120
DMEFPLYQSS KESLFFDSSV NDQNSPNNFE LPNTLQAIKS QLNGDQCNGS PEKSNKIPCG  180
NFPASNFLPI EQHKLFNDDA APVTRSISIP KANQESTVAC GSFNSPVQQL SFSSPQEKLS  240
PTISAGNLVG NGPIASSKTR IRWTQDLHEK FVECVNRLGG AEKATPKAIL RLMDSDGLTI  300
FHVKSHLQKY RIAKYMPEST QGSYALPKKY FFPFSGKSEK RTSAENVHLD VKAGLQIKEA  360
LQLQLDVQRR LHEQLEIQRK LQLQIEEQGK QLKMMFDRQQ KSNNSERSSK DNNNDDNEVT  420
ILEGTGISHF PSKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-23	258	315	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	258	315	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	258	315	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	258	315	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.YAF9X

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177485.1	0.0	myb family transcription factor PHL5 isoform X1
Refseq	XP_025679849.1	0.0	myb family transcription factor PHL5 isoform X1
Swissprot	Q0WVU3	1e-67	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A444XFY4	0.0	A0A444XFY4_ARAHY; Uncharacterized protein
STRING	GLYMA02G30800.1	1e-161	(Glycine max)
STRING	GLYMA09G17404.1	1e-161	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-70	G2-like family protein