PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.YN1IJ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 1035aa MW: 118002 Da PI: 4.7441

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.YN1IJ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.6	9.9e-14	290	371	1	81
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek..dgkwevtkl 81 +fY++YAk GFs +s+s+k ++++fvC ++g+r+++ + ++++r+raet +gC a++ +++++ +w++++ Araip.YN1IJ 290 EFYQQYAKYHGFSAIRSRSEKC--GVVRIRQEFVCHRQGYRSPKFYSiPNRQKRPRAETWCGCSARMLLRMDDesGRHWRMSEA 371 6**************99998..67779**********99888899999*************999876788988775 PP
2	FAR1	62.9	9.4e-20	570	658	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++YAk GF r+s+++k+ + ++++fvC ++g+r+++ + ++++r+raet +gC a++ +++++ +g+w v+ ++ HnH++ Araip.YN1IJ 570 EFYQQYAKYHGFGARRSRNEKR--GEVRIRQEFVCHRQGYRSSKFYSmPNRQKRPRAETWCGCSARMLLRMDDeSGRWLVAYFSDAHNHHV 658 6**************98887..77889*********998876789999**************99*************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-11	290	372	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.9E-17	570	658	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.357	827	863	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1035 aa Download sequence Send to blast
MASPSPSMER RVAGDEDTTG GMPIANEAEI SNGADHRVGS VEGEGSVGME SDEYDFQEDE 60 IEHDHHVEAD VDNGDVVELE DILDDARGMS GNYAEDEFYA VDSVESIGWI DFLNLSEEDV 120 LRFNFADVDI AFEFYQQYAK HHGFSARRSR SEKRGVLMAS PSPSMERRVA GDEDTTRGMP 180 VADEAEISNG ADHGVGSVKG EGSVGMESDE YDFQKDETEH DHHAEADVDN GDVVELEDIL 240 DDARGMSGNY AEDEFYAVDF VESIGWIDFL NLSEEDVLRF NFADVDIAFE FYQQYAKYHG 300 FSAIRSRSEK CGVVRIRQEF VCHRQGYRSP KFYSIPNRQK RPRAETWCGC SARMLLRMDD 360 ESGRHWRMSE ADIEQMNDMR KGGIGVSQIH DFMASLAVGY HNVPYTTREM HNVNAKQRRE 420 GGLDAESCLS YTEFLRHFHR CLMFVRAKEV EADFECAKSD PVMTINLKQL ERSAAENYTR 480 AIFYLFVPIL DRACAMRVVD SEDNEADVDN GDAVELEDSL DGAGGMSDNY AEDEFYAVDS 540 VESIGWIDFL NLSKEDVLRF NFADVDIAFE FYQQYAKYHG FGARRSRNEK RGEVRIRQEF 600 VCHRQGYRSS KFYSMPNRQK RPRAETWCGC SARMLLRMDD ESGRWLVAYF SDAHNHHVLE 660 LRLSSMLPGH RRMSEADIEQ MNDMRKGGIG VSQIHDFMAS LAVGYHNVPY TTREMHNVNA 720 KQRREGGLDA ESCLSYTEFL RHFHRCLMFV RAKEVEADFE CAKSDPVMTI NLKQLERSAA 780 ENYTRAIFYL FVPILDRACA IRVVDSEDNG SYFIYTVSRY GTPGKDWRVV ATSDTREVRC 840 TCMRMECFGV PYEHIIAVLV LNNVHEILRS LILPRWTKDA KLVAVQSMGV IWDSVQLTQH 900 WCLMDWYRKV CKIACHSTEK FQFARDITML MLKHFKNEDA GDTSFPPEGP PTEGGRGPAR 960 NPPRRRRVRT AAQWSHPAQL QMTWIRWTLT CLSSDLYATA EILSFQCSDS DTQAGFANSD 1020 FAGTNTSGPV MSLAD

Sequence ? help Back to Top

Protein Sequence Length: 1035 aa Download sequence Send to blast

MASPSPSMER RVAGDEDTTG GMPIANEAEI SNGADHRVGS VEGEGSVGME SDEYDFQEDE  60
IEHDHHVEAD VDNGDVVELE DILDDARGMS GNYAEDEFYA VDSVESIGWI DFLNLSEEDV  120
LRFNFADVDI AFEFYQQYAK HHGFSARRSR SEKRGVLMAS PSPSMERRVA GDEDTTRGMP  180
VADEAEISNG ADHGVGSVKG EGSVGMESDE YDFQKDETEH DHHAEADVDN GDVVELEDIL  240
DDARGMSGNY AEDEFYAVDF VESIGWIDFL NLSEEDVLRF NFADVDIAFE FYQQYAKYHG  300
FSAIRSRSEK CGVVRIRQEF VCHRQGYRSP KFYSIPNRQK RPRAETWCGC SARMLLRMDD  360
ESGRHWRMSE ADIEQMNDMR KGGIGVSQIH DFMASLAVGY HNVPYTTREM HNVNAKQRRE  420
GGLDAESCLS YTEFLRHFHR CLMFVRAKEV EADFECAKSD PVMTINLKQL ERSAAENYTR  480
AIFYLFVPIL DRACAMRVVD SEDNEADVDN GDAVELEDSL DGAGGMSDNY AEDEFYAVDS  540
VESIGWIDFL NLSKEDVLRF NFADVDIAFE FYQQYAKYHG FGARRSRNEK RGEVRIRQEF  600
VCHRQGYRSS KFYSMPNRQK RPRAETWCGC SARMLLRMDD ESGRWLVAYF SDAHNHHVLE  660
LRLSSMLPGH RRMSEADIEQ MNDMRKGGIG VSQIHDFMAS LAVGYHNVPY TTREMHNVNA  720
KQRREGGLDA ESCLSYTEFL RHFHRCLMFV RAKEVEADFE CAKSDPVMTI NLKQLERSAA  780
ENYTRAIFYL FVPILDRACA IRVVDSEDNG SYFIYTVSRY GTPGKDWRVV ATSDTREVRC  840
TCMRMECFGV PYEHIIAVLV LNNVHEILRS LILPRWTKDA KLVAVQSMGV IWDSVQLTQH  900
WCLMDWYRKV CKIACHSTEK FQFARDITML MLKHFKNEDA GDTSFPPEGP PTEGGRGPAR  960
NPPRRRRVRT AAQWSHPAQL QMTWIRWTLT CLSSDLYATA EILSFQCSDS DTQAGFANSD  1020
FAGTNTSGPV MSLAD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.YN1IJ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A445DQU4	0.0	A0A445DQU4_ARAHY; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	9e-18	FAR1-related sequence 11