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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.YN359 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 264aa MW: 29943.6 Da PI: 8.2431 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 35.5 | 1.3e-11 | 66 | 91 | 26 | 51 |
HHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 26 ELSvLCdaevaviifsstgklyeyss 51
+SvLCdaeva+i+fs+tgkl+eyss
Araip.YN359 66 GISVLCDAEVALIVFSTTGKLFEYSS 91
69**********************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.8.50 | 1.5E-7 | 43 | 67 | No hit | No description |
| SMART | SM00432 | 0.0016 | 46 | 92 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 13.358 | 50 | 93 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.8E-9 | 55 | 70 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 7.46E-10 | 64 | 98 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.0E-7 | 67 | 89 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.8E-9 | 70 | 91 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 264 aa Download sequence Send to blast |
MAQTLAMPVA PSLALISNPR PLSRAVYFPV LNPPKVRGLS IECARVGGVK ITNNKRIEFS 60 LQYIHGISVL CDAEVALIVF STTGKLFEYS SDPCRRSIYA FTFPISSYIY AFCWKCSSSC 120 FSKSIFIEYG LNQNEEARTE LRAVDAWILT DKPYSNQSIH SELLNLEKIS KSDLSKVSSL 180 IKKQTKRFQV LSEKIDDLCR RIGSDPSEPP LSSEFRAQTQ TEFLLEALSS SPEIHRYTGI 240 NHVCCLCIFV YSYLLFIDLY TIWR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5mmj_m | 3e-16 | 1 | 72 | 1 | 82 | plastid ribosomal protein uS13c |
| 5mmm_m | 3e-16 | 1 | 72 | 1 | 82 | plastid ribosomal protein uS13c |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.YN359 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020982317.1 | 1e-61 | uncharacterized protein LOC107457666 | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60910.1 | 3e-12 | AGAMOUS-like 8 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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