PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.YN88K

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 90aa MW: 10204 Da PI: 10.7646

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.YN88K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	76	6.9e-24	7	75	1	66
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpe...eeredamsslvyeAe 66 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++ ++ + + + +s +yeA+ Araip.YN88K 7 PCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQRRKHiliHSKLFIKKSDTYEAK 75 7*********************************************98643111445556667777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.474	6	90	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-22	7	56	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MGSGNSPCAS CKLLRRRCAK DCIFAPYFPS DDPQKFAIVH KVFGASNVSK MLQRRKHILI 60 HSKLFIKKSD TYEAKHKSPR FTGHGHLSMN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-21	2	89	7	92	LOB family transfactor Ramosa2.1
5ly0_B	4e-21	2	89	7	92	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.YN88K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015944263.1	5e-34	LOB domain-containing protein 12-like
Refseq	XP_025622885.1	5e-34	LOB domain-containing protein 12
Refseq	XP_025686079.1	4e-34	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-29	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A445B875	1e-32	A0A445B875_ARAHY; Uncharacterized protein
STRING	XP_009369560.1	4e-31	(Pyrus x bretschneideri)
STRING	XP_008384740.1	3e-31	(Malus domestica)
STRING	Migut.F00636.1.p	5e-31	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-32	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]