PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YNW3R
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 377aa    MW: 42348.4 Da    PI: 4.7884
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YNW3RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR26.21.6e-082863439
          TCR  4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
                   CnC++ +C++++C C  ag +C+++C+C+ C N 
  Araip.YNW3R 28 SCCNCRRIQCMNLFCVCLRAGDFCNDSCSCNWCLNI 63
                 57********************************96 PP
2TCR43.46.7e-14100138240
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++kgCnC+kskC+ +YC Cf a++ Cs++C+Ce+C+Nk 
  Araip.YNW3R 100 HRKGCNCRKSKCKSNYCACFRAEVGCSSRCRCEGCMNKY 138
                  689**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011140.00112566IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163426.37426139IPR005172CRC domain
PfamPF036385.0E-62962IPR005172CRC domain
SMARTSM011141.8E-1199140IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-9102137IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MASLGSSPGG GNKKRKRSSS NNGDNNGSCC NCRRIQCMNL FCVCLRAGDF CNDSCSCNWC  60
LNIWENKDFV DEKKKEIELR DPHAFQPKII FGENETAAWH RKGCNCRKSK CKSNYCACFR  120
AEVGCSSRCR CEGCMNKYGN GIIKDEQEQC VLTNNNNGGN DVTVDNESPS SQSHHPVADN  180
DFFDQLSELD ADMVINEEDE AECYRQQMLL AGDGENGIYN DNMDTASNQV NHVPAAASYY  240
NYNVYGNIIQ DNVAAHNYHQ TLTPEQIFRV ENNTTEEQNT DICMLLDDPD LQGPSPFSFY  300
DNNIVDEPSS VHNFSTTEPI IQSSSQRYKP QSKSYGDLFQ QEASSSGGMN HRQHPSLLMN  360
AQHQRQNDAI NMQAHSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-133013614120Protein lin-54 homolog
5fd3_B2e-133013614120Protein lin-54 homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11217KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YNW3R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020967831.10.0uncharacterized protein LOC110267050
TrEMBLA0A444XYU91e-78A0A444XYU9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2979422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.17e-27Tesmin/TSO1-like CXC domain-containing protein