PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YS13X
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 278aa    MW: 30612.5 Da    PI: 9.1993
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YS13XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.56.9e-31175231158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVN+KQy++Il+RRq Rakle+++kl ++ rkpylheSRh hAl+R+Rg gGrF
  Araip.YS13X 175 EEPIYVNSKQYHAILRRRQYRAKLEAHNKL-IRDRKPYLHESRHLHALKRARGAGGRF 231
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.6E-35173234IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.126174234IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-26176231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-23177199IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860179199IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-23208231IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKCMCEKDSA LCSVHATPAY VLGCSSSWGN SPESDVVQQS SMSDKLNLNM GVVLPQQCHK  60
SRPLNLQFQE QDSSSTLSTN QSGQISIQHS NSSACSSSLS RNMEKTAGNQ ISSSMGILDF  120
SFPPSELDRG QSTAPIAFHC AYPCYGGILA AAYGQHSKVI GSEAVRIPLP LDLREEPIYV  180
NSKQYHAILR RRQYRAKLEA HNKLIRDRKP YLHESRHLHA LKRARGAGGR FLNTKNLDQS  240
KVTSTTTTSY QAYIGRDIQD YTADTGGAAS HRRLSVLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-21175238265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YS13X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171434.10.0nuclear transcription factor Y subunit A-8 isoform X1
RefseqXP_016171435.10.0nuclear transcription factor Y subunit A-8 isoform X1
RefseqXP_025672998.10.0nuclear transcription factor Y subunit A-8 isoform X1
TrEMBLA0A444Y8P70.0A0A444Y8P7_ARAHY; Uncharacterized protein
STRINGXP_007135485.11e-86(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.42e-48nuclear factor Y, subunit A8