PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YS1VM
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 742aa    MW: 81791.8 Da    PI: 6.7603
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YS1VMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2064119156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++  +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Araip.YS1VM  64 KKGYHRHTQHQIHEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 119
                  5778899**********************************************998 PP
2START185.43e-582594731206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  ela +a++el ++a++++p+Wv+s     e++n+de+l++f++  v        ++e +r+s+v +m++++lve+l+d++ qW++++     +a tle
  Araip.YS1VM 259 ELAVAAMEELTRLAQVGDPLWVQSNqhctEILNEDEYLRTFPPR-VigpkalgLRSESSRESAVIIMNHTKLVEILMDVN-QWSTMFCgivsRALTLE 354
                  57899************************************995.559********************************.******999******** PP

                  EECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
        START  84 vissggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                  v+s+g a  +  a  ++ splvp R+ +fvRy++++++g+w++vdvS+++e+      s+    ++pSg+lie+++ng+skvtw+ehv++++r +h l
  Araip.YS1VM 355 VLSTGVAGNYNGALQVVASPLVPsRENYFVRYCKEHPDGRWTVVDVSLENESRSRR--SSR---RRPSGCLIEELPNGYSKVTWIEHVEVDDRGVHTL 447
                  **************************************************999763..333...59******************************** PP

                  HHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 181 lrslvksglaegaktwvatlqrqcek 206
                  +++lvk gla+gak+w+atl+rqce+
  Araip.YS1VM 448 YKPLVKCGLAFGAKRWMATLERQCER 473
                  ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-2246119IPR009057Homeodomain-like
SuperFamilySSF466892.17E-1948121IPR009057Homeodomain-like
PROSITE profilePS5007116.3961121IPR001356Homeobox domain
SMARTSM003892.1E-1963125IPR001356Homeobox domain
PfamPF000464.3E-1864119IPR001356Homeobox domain
CDDcd000862.28E-1864122No hitNo description
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PROSITE profilePS5084840.629250476IPR002913START domain
SuperFamilySSF559611.31E-30251475No hitNo description
CDDcd088753.58E-102254472No hitNo description
SMARTSM002343.0E-55259473IPR002913START domain
PfamPF018525.0E-49260473IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-4372468IPR023393START-like domain
SuperFamilySSF559613.02E-20491709No hitNo description
PROSITE profilePS5084810.122519602IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MFPTNVFDSH QQHMMLDMSS SHNESDLGIR TGDDEFFDIK SATEIIMEAP SGDDEQDPNQ  60
RPKKKGYHRH TQHQIHEMEA FFKQCPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKA  120
QHERHENAIL KAENEKLRAE NSRYKEALSN ATCPNCGGPA ALGEMSFDEQ HLRIENARLK  180
QEIDRISGIA EKYVGKPVTS SHNSNHMAPH SRSLDLGVGS YGGGSQSSAG GMVGEMYGGS  240
ELLRPFPVPC DSDKPRIVEL AVAAMEELTR LAQVGDPLWV QSNQHCTEIL NEDEYLRTFP  300
PRVIGPKALG LRSESSRESA VIIMNHTKLV EILMDVNQWS TMFCGIVSRA LTLEVLSTGV  360
AGNYNGALQV VASPLVPSRE NYFVRYCKEH PDGRWTVVDV SLENESRSRR SSRRRPSGCL  420
IEELPNGYSK VTWIEHVEVD DRGVHTLYKP LVKCGLAFGA KRWMATLERQ CERVASYIGG  480
GAGELCGTSA EGRRSMLKLA ERMVMSFCTG VGASTAHAWT TLSSDMDDVR VMTRKSMDDP  540
GRPPGIVLCA ATSFSLPVPP NTLFHFLRDQ NSRSQWDILS NRGLVQEITH IASSSNALSL  600
LRVNSVNSSQ SNMLILQESC TDCSGSYVVY APVDMAAMNI ILSGGDPDYL ALLPSGFAIL  660
PDGLAASSGG SLLTVAFQIL VDSAPTAKLS LGSVATVNTL IKCTVERIKA AVVSDTTSFH  720
NLASLPSLYV RRIKIAAFRT SQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YS1VM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020978973.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A444Z7E40.0A0A444Z7E4_ARAHY; Uncharacterized protein
STRINGGLYMA01G45070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]