PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.YS3WM

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 229aa MW: 26660 Da PI: 6.0258

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.YS3WM	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.6	6.8e-38	52	171	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++Pw+L+ ++ ae k+wy++s+r + +r+t++gyWkatg +++v+++ ++ Araip.YS3WM 52 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWELDGRALAEGKQWYYYSRRTQ--------SRVTENGYWKATGMEEPVMTSsTN 140 79***********************999.99**********97777889***9854........799************98677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk +vf+ g++p++ kt+W+m+ey l Araip.YS3WM 141 KRVGIKKYFVFHLGESPSAIKTNWIMQEYCL 171 88*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-48	47	198	IPR003441	NAC domain
PROSITE profile	PS51005	46.531	52	199	IPR003441	NAC domain
Pfam	PF02365	3.2E-22	53	171	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
AWVSRQHPYY KYLSFSICTI NTTHLHHYSN LTHSLLLFSL PIFLMGDNNV NLPPGFRFYP 60 TDEELVVHFL HRKAALLPCH PDVIPDLDLY PYDPWELDGR ALAEGKQWYY YSRRTQSRVT 120 ENGYWKATGM EEPVMTSSTN KRVGIKKYFV FHLGESPSAI KTNWIMQEYC LSDYSASSSR 180 SSKRKSDYSK WVICRVYERN GDDDDGTELS CLDEVFLSLD DLDEISLPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-40	48	200	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-40	48	200	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-40	48	200	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-40	48	200	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-40	48	200	16	169	NAC domain-containing protein 19
3swm_B	1e-40	48	200	16	169	NAC domain-containing protein 19
3swm_C	1e-40	48	200	16	169	NAC domain-containing protein 19
3swm_D	1e-40	48	200	16	169	NAC domain-containing protein 19
3swp_A	1e-40	48	200	16	169	NAC domain-containing protein 19
3swp_B	1e-40	48	200	16	169	NAC domain-containing protein 19
3swp_C	1e-40	48	200	16	169	NAC domain-containing protein 19
3swp_D	1e-40	48	200	16	169	NAC domain-containing protein 19
4dul_A	1e-40	48	200	13	166	NAC domain-containing protein 19
4dul_B	1e-40	48	200	13	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.YS3WM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847238	9e-49	KC847238.1 Gossypium hirsutum NAC domain protein NAC61 mRNA, complete cds.
GenBank	KJ801818	9e-49	KJ801818.1 Gossypium hirsutum NAC transcription factor (XND1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016179211.1	1e-137	NAC domain-containing protein 104-like
Refseq	XP_025680369.1	1e-137	NAC domain-containing protein 104
Swissprot	Q8GWK6	4e-90	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A444WZD3	1e-136	A0A444WZD3_ARAHY; Uncharacterized protein
STRING	GLYMA08G19300.1	1e-108	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-86	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]