PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YWB61
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 420aa    MW: 46784.5 Da    PI: 8.9593
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YWB61genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-1388130347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T eEd+ +++a++++G++ W+tIa  +   Rt++ +k+rw++ 
      Araip.YWB61  88 AFTLEEDDTIIRAHARFGNK-WATIAPLLS-ARTDNAIKNRWNST 130
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-1864135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-46993IPR009057Homeodomain-like
PROSITE profilePS5129418.58881135IPR017930Myb domain
SMARTSM007174.5E-1185133IPR001005SANT/Myb domain
PfamPF002496.4E-1288130IPR001005SANT/Myb domain
CDDcd001671.39E-888131No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1794132IPR009057Homeodomain-like
PROSITE profilePS515199.932207300IPR003035RWP-RK domain
PfamPF020422.4E-11255280IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKQHFQSLKI ASGVELEQNA LVETIEATIE GVHLRFESIP VRQDASPNVR EELAQDPSLQ  60
KIMMEGVLSK SCRLRWCNQL STLVEHRAFT LEEDDTIIRA HARFGNKWAT IAPLLSARTD  120
NAIKNRWNST LKRKCASMGP IDDPHFAQPL KRFVRTSVAV PVSTVVVRYS LLTVMAKTEE  180
EGQMDYESTR RDFAGKRECG GKESEEGSVV VDDEGKREKE KEEGVGRVDG LWRRRRAQKM  240
EGEREDGLVV VVAMFAPTTM KRICRQHGIS HWPSRKINKV NLSLSKLKRI IESVQGVEGA  300
FALNPLSTKQ SVSRKWLMIK EVGKETKGPR AKSCSSADST NPTSHGSPPI ESSPVKDIFI  360
TSNNDQCVGL RSPEATMQLP NNTLSYPTTC AIPDMVATKL QEPFGGMLVK DAGSSKEFCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-196413534105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-196413534105C-Myb DNA-Binding Domain
1msf_C3e-196413534105C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YWB61
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086741e-104KF208674.1 Arachis hypogaea putative MYB-related protein 20 (MYB20) gene, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-34myb domain protein 73