PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.YX9Q9

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 489aa MW: 55297.6 Da PI: 9.9666

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.YX9Q9	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.8	1.8e-11	10	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 r++W ++E+e l+ +v ++G+g+Wk+I + + R+ ++k++w+ + Araip.YX9Q9 10 RQKWKKDEEEALKAGVMKYGSGNWKKILQDPKfsrflTSRSNVNLKDKWRVL 61 89***********************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.474	5	66	IPR017930	Myb domain
SuperFamily	SSF46689	2.65E-13	9	63	IPR009057	Homeodomain-like
SMART	SM00717	9.8E-6	9	64	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.6E-13	9	67	IPR009057	Homeodomain-like
Pfam	PF00249	3.7E-8	10	61	IPR001005	SANT/Myb domain
CDD	cd11660	1.93E-18	11	62	No hit	No description
SuperFamily	SSF52540	1.42E-107	124	480	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.850.10	1.9E-106	161	480	IPR001752	Kinesin motor domain
CDD	cd01366	7.55E-169	161	481	No hit	No description
SMART	SM00129	3.1E-130	161	489	IPR001752	Kinesin motor domain
PROSITE profile	PS50067	101.281	163	481	IPR001752	Kinesin motor domain
Pfam	PF00225	9.7E-97	188	480	IPR001752	Kinesin motor domain
PRINTS	PR00380	9.1E-34	228	249	IPR001752	Kinesin motor domain
PRINTS	PR00380	9.1E-34	351	368	IPR001752	Kinesin motor domain
PRINTS	PR00380	9.1E-34	382	400	IPR001752	Kinesin motor domain
PRINTS	PR00380	9.1E-34	431	452	IPR001752	Kinesin motor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007018	Biological Process	microtubule-based movement
GO:0003677	Molecular Function	DNA binding
GO:0003777	Molecular Function	microtubule motor activity
GO:0005524	Molecular Function	ATP binding
GO:0008017	Molecular Function	microtubule binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
QAVSEMVQHR QKWKKDEEEA LKAGVMKYGS GNWKKILQDP KFSRFLTSRS NVNLKDKWRV 60 LTAQRSKQPT HVAASSKARR KLETEKAAAL KSELKCLREE LKQIRDDRAC QQKQVKDLTA 120 ELAKYKEETN ALEDTILQLQ LKLREREELR KKMQNTILDL KGKIRVFCRV RPLLPDDGTG 180 TDMKHLAREL NWFKMKHSFT FDKVFNHDAS QNDVFLEISE LVQSALDGYK VCIFAYGQTG 240 AGKTYTMMGR PDAPDLKGLI PRSLEQIFQT SQSLKDMGWK YKMQVSILEI YNREIRDLLL 300 NRPCGPGKKR IRHDANGNAF VPDLTIVDVC SMNDISSLLN RAAQCRSVGR TQMNEESSRS 360 HFVLTVHICG TNENTKQQEQ GVLSLIDLAG TARVSSSGVT GDRLKENQAI NDSLSSLIDV 420 ICALAKKAKH VPFRNSILTE LLQPYLVGDS KTLMFVNIAP DQSSTSESIG SLRWAARVND 480 CGIGIPKPK

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

QAVSEMVQHR QKWKKDEEEA LKAGVMKYGS GNWKKILQDP KFSRFLTSRS NVNLKDKWRV  60
LTAQRSKQPT HVAASSKARR KLETEKAAAL KSELKCLREE LKQIRDDRAC QQKQVKDLTA  120
ELAKYKEETN ALEDTILQLQ LKLREREELR KKMQNTILDL KGKIRVFCRV RPLLPDDGTG  180
TDMKHLAREL NWFKMKHSFT FDKVFNHDAS QNDVFLEISE LVQSALDGYK VCIFAYGQTG  240
AGKTYTMMGR PDAPDLKGLI PRSLEQIFQT SQSLKDMGWK YKMQVSILEI YNREIRDLLL  300
NRPCGPGKKR IRHDANGNAF VPDLTIVDVC SMNDISSLLN RAAQCRSVGR TQMNEESSRS  360
HFVLTVHICG TNENTKQQEQ GVLSLIDLAG TARVSSSGVT GDRLKENQAI NDSLSSLIDV  420
ICALAKKAKH VPFRNSILTE LLQPYLVGDS KTLMFVNIAP DQSSTSESIG SLRWAARVND  480
CGIGIPKPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3t0q_A	1e-90	158	484	1	347	AGR253Wp
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Kinesin that supports microtubule movement in an ATP-dependent manner and has a minus-end directed polarity. Plays a crucial role in spindle morphogenesis in male meiosis. In mitosis, is required for normal microtubule accumulation at the spindle poles during prophase and may play a role in spindle assembly during prometaphase. {ECO:0000269\|PubMed:11973272, ECO:0000269\|PubMed:12112142, ECO:0000269\|PubMed:12686621, ECO:0000269\|PubMed:18088313}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.YX9Q9

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015956238.1	0.0	kinesin-like protein KIN-14C isoform X1
Swissprot	Q07970	1e-167	KN14C_ARATH; Kinesin-like protein KIN-14C
TrEMBL	A0A445DRK6	0.0	A0A445DRK6_ARAHY; Kinesin-like protein
STRING	XP_007148296.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-15	telomere repeat binding factor 1

Publications ? help Back to Top
Reddy AS,Day IS Kinesins in the Arabidopsis genome: a comparative analysis among eukaryotes. BMC Genomics, 2001. 2: p. 2 [PMID:11472632] Chen C, et al. The Arabidopsis ATK1 gene is required for spindle morphogenesis in male meiosis. Development, 2002. 129(10): p. 2401-9 [PMID:11973272] Marcus AI,Ambrose JC,Blickley L,Hancock WO,Cyr RJ Arabidopsis thaliana protein, ATK1, is a minus-end directed kinesin that exhibits non-processive movement. Cell Motil. Cytoskeleton, 2002. 52(3): p. 144-50 [PMID:12112142] Marcus AI,Li W,Ma H,Cyr RJ A kinesin mutant with an atypical bipolar spindle undergoes normal mitosis. Mol. Biol. Cell, 2003. 14(4): p. 1717-26 [PMID:12686621] Rose A, et al. Genome-wide identification of Arabidopsis coiled-coil proteins and establishment of the ARABI-COIL database. Plant Physiol., 2004. 134(3): p. 927-39 [PMID:15020757] Richardson DN,Simmons MP,Reddy AS Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes. BMC Genomics, 2006. 7: p. 18 [PMID:16448571] Vanstraelen M,Inzé D,Geelen D Mitosis-specific kinesins in Arabidopsis. Trends Plant Sci., 2006. 11(4): p. 167-75 [PMID:16530461] Quan L, et al. Functional divergence of the duplicated AtKIN14a and AtKIN14b genes: critical roles in Arabidopsis meiosis and gametophyte development. Plant J., 2008. 53(6): p. 1013-26 [PMID:18088313] Gardiner J,Overall R,Marc J Putative Arabidopsis homologues of metazoan coiled-coil cytoskeletal proteins. Cell Biol. Int., 2011. 35(8): p. 767-74 [PMID:21284606] Zhu C,Dixit R Functions of the Arabidopsis kinesin superfamily of microtubule-based motor proteins. Protoplasma, 2012. 249(4): p. 887-99 [PMID:22038119] Smékalová V, et al. Involvement of YODA and mitogen activated protein kinase 6 in Arabidopsis post-embryogenic root development through auxin up-regulation and cell division plane orientation. New Phytol., 2014. 203(4): p. 1175-93 [PMID:24923680] Bokros CL, et al. Function of the p86 subunit of eukaryotic initiation factor (iso)4F as a microtubule-associated protein in plant cells. Proc. Natl. Acad. Sci. U.S.A., 1995. 92(15): p. 7120-4 [PMID:7624381] Mitsui H,Yamaguchi-Shinozaki K,Shinozaki K,Nishikawa K,Takahashi H Identification of a gene family (kat) encoding kinesin-like proteins in Arabidopsis thaliana and the characterization of secondary structure of KatA. Mol. Gen. Genet., 1993. 238(3): p. 362-8 [PMID:8492804] Liu B,Cyr RJ,Palevitz BA A kinesin-like protein, KatAp, in the cells of arabidopsis and other plants. Plant Cell, 1996. 8(1): p. 119-132 [PMID:8597656]