PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YZ7F5
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 137aa    MW: 16028.5 Da    PI: 10.6714
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YZ7F5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++++  g W+t ++  g++R++k+c++rw +yl
      Araip.YZ7F5 17 KGPWTPEEDQKLIDYIQKHEHGKWRTLPKNAGLKRCGKSCRLRWANYL 64
                     79********************************************97 PP
2Myb_DNA-binding57.53.1e-1870114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e ++++++ lG++ W+tIa+ ++ gRt++++k++w+++
      Araip.YZ7F5  70 RGRFSFEEEEMIIQLHTVLGNK-WSTIAANLP-GRTDNEIKNYWNTH 114
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-251067IPR009057Homeodomain-like
PROSITE profilePS5129417.1761264IPR017930Myb domain
SuperFamilySSF466891.39E-3114111IPR009057Homeodomain-like
SMARTSM007175.9E-141666IPR001005SANT/Myb domain
PfamPF002491.0E-161764IPR001005SANT/Myb domain
CDDcd001678.29E-101964No hitNo description
PROSITE profilePS5129425.6765119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2768119IPR009057Homeodomain-like
SMARTSM007179.9E-1669117IPR001005SANT/Myb domain
PfamPF002494.8E-1570114IPR001005SANT/Myb domain
CDDcd001675.22E-1072115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAKSCSSEKN NNNGLKKGPW TPEEDQKLID YIQKHEHGKW RTLPKNAGLK RCGKSCRLRW  60
ANYLRPDIKR GRFSFEEEEM IIQLHTVLGN KWSTIAANLP GRTDNEIKNY WNTHIKKKLL  120
KMGIDPITHK QSKRKST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31151195108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YZ7F5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312011e-108KT031201.1 Glycine max clone HN_CCL_73 MYB/HD-like transcription factor (Glyma12g34650.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187502.12e-98transcription factor MYB74-like
RefseqXP_025627606.12e-98transcription factor MYB74
SwissprotQ9LDR88e-76MY102_ARATH; Transcription factor MYB102
TrEMBLA0A445ARY84e-97A0A445ARY8_ARAHY; Uncharacterized protein
STRINGGLYMA12G34650.21e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-78MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]