PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YZ8MT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 324aa    MW: 35882.4 Da    PI: 6.2493
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YZ8MTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.74.2e-204993246
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 ri+n++ rqvtfsk rng+lKKA+EL +LCdaev v+i s t+ +
  Araip.YZ8MT 49 RIDNSTSRQVTFSKQRNGLLKKAKELAILCDAEVRVMISSITNSM 93
                 8*************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-244099IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.4274093IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-194198IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-174262IPR002100Transcription factor, MADS-box
PfamPF003191.3E-174993IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.6201.3E-459101IPR014729Rossmann-like alpha/beta/alpha sandwich fold
PRINTSPR004046.6E-176277IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-177798IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.30.70.201.4E-10140213No hitNo description
SuperFamilySSF548623.0E-12149230No hitNo description
PROSITE profilePS513798.668153184IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domain
PROSITE profilePS513798.651196228IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domain
PROSITE patternPS001980208219IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved site
Gene3DG3DSA:3.30.70.207.5E-7214227No hitNo description
Gene3DG3DSA:3.40.50.6201.3E-4235300IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MIFSSAALVT IFSVAFSDES MLSVFSFFWL FLELVLTESD GERKIAIRRI DNSTSRQVTF  60
SKQRNGLLKK AKELAILCDA EVRVMISSIT NSMISPVPDW NCMGAVDCID CATNASVVSA  120
LNEGILAATE MAGLQKKPWV MINVNDDKDL HIRKAEFDPE DCPANCSRPC KIVCPANAIS  180
FLGKSASGTS FNTELPKVLM DGVITERCYG CGRCLPVCPY DKIMGANFPE SAAGEHRVQE  240
HRENEEQGMR NILNDYILIY RRMGVEAEKL HIIDKDCIEK GIVELICKHN IKKLVMGAAS  300
NKYHSSSFAK DTLYTQGTRD AGLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YZ8MT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020961613.11e-172uncharacterized protein LOC110264240
RefseqXP_029150228.11e-172uncharacterized protein LOC112762599
RefseqXP_029150229.11e-172uncharacterized protein LOC112762599
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.25e-19AGAMOUS-like 16