PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Z00VV
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family YABBY
Protein Properties Length: 167aa    MW: 18708.2 Da    PI: 8.8953
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Z00VVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY72.71.3e-22566667
        YABBY  6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldesl 67
                  +e+vCyv CnfCnt lavsvP +sl+++vtvrCGhC++lls + ++ s + +++++l+ s 
  Araip.Z00VV  5 GTERVCYVYCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSSQKQHLSFQDPSSKELGSSS 66
                 589***************************************99999999999999998765 PP
2YABBY131.98.3e-4179144104170
        YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   +++  pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Araip.Z00VV  79 VDHDPQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 144
                  44556788888.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.0E-606144IPR006780YABBY protein
SuperFamilySSF470951.7E-889137IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.0E-592138IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDMMGTERVC YVYCNFCNTT LAVSVPCSSL LTIVTVRCGH CANLLSSQKQ HLSFQDPSSK  60
ELGSSSSRCN KLSAAFDPVD HDPQPRIPPI RPPEKRQRVP SAYNRFIKEE IQRIKASNPD  120
ISHREAFSTA AKNWAHFPHI HFGLKLDGNK QAKLDQGEGT QKSNGFY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Z00VV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0951272e-86BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936114.11e-100putative axial regulator YABBY 2 isoform X1
RefseqXP_025614300.11e-100putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB07e-71YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A445BX726e-99A0A445BX72_ARAHY; Uncharacterized protein
STRINGGLYMA12G10210.31e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.16e-60YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]