PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Z18JU

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WRKY

Protein Properties

Length: 103aa MW: 11932.7 Da PI: 10.3899

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Z18JU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	70.5	2.4e-22	34	84	2	55
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege 55 +Dgy+WrKYG+K+ k+s+fprsYYrCt gC++kk r +dp+ v +tY g Araip.Z18JU 34 EDGYKWRKYGKKSLKKSPFPRSYYRCTAIGCNTKK---RYMDDPTHVLTTYVGA 84 8********************************...8899*******985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-20	21	84	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-19	27	84	IPR003657	WRKY domain
PROSITE profile	PS50811	19.898	28	90	IPR003657	WRKY domain
SMART	SM00774	6.2E-17	33	86	IPR003657	WRKY domain
Pfam	PF03106	1.1E-15	34	83	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MALVADTMSM NNKRNKNNLS KITYLTESES ENLEDGYKWR KYGKKSLKKS PFPRSYYRCT 60 AIGCNTKKRY MDDPTHVLTT YVGARSRFAT NPPPSIKIFQ PLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-16	26	83	10	70	Probable WRKY transcription factor 4
2lex_A	1e-16	26	83	10	70	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Z18JU

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016185367.1	1e-49	probable WRKY transcription factor 68
Refseq	XP_025635754.2	1e-49	WRKY transcription factor 68-like
Swissprot	O22900	3e-22	WRK23_ARATH; WRKY transcription factor 23
Swissprot	Q9FGZ4	4e-22	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A445AFD3	6e-39	A0A445AFD3_ARAHY; Uncharacterized protein
STRING	AES82212	4e-22	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	1e-24	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]