PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Z1ZCU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 205aa    MW: 22776.5 Da    PI: 6.9545
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Z1ZCUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.21.1e-0766136368
         FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkv 68 
                  Y+e+Ak  GF vrk+    +   g  ++r+f C ++g+r++++ +        + ++r    + r++C  ++++
  Araip.Z1ZCU  66 YKEFAKLRGFGVRKDVACVN---GVLIRRDFFCHRQGTRHPKHYDrpegvseeRLESRMDFIHPRMNCSIQIVL 136
                  9*************987665...99*****************99988887654444555666778888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-566134IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MNGTTTKALS AIRAVNPGEK SVGGAVDGNR SAGADDMTEG GLSRPVGAQD FLGKEFATEE  60
DAYAAYKEFA KLRGFGVRKD VACVNGVLIR RDFFCHRQGT RHPKHYDRPE GVSEERLESR  120
MDFIHPRMNC SIQIVLVPFR TTKMYLLNDQ SPYENDSSHP SLNSSTTKER HIQLLPPHEA  180
LVYAKKEIDN AHLVNENPDL YAPSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Z1ZCU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016178441.17e-60uncharacterized protein LOC107620850
TrEMBLA0A445A5415e-84A0A445A541_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1719126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-06FAR1-related sequence 10