PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Z2BGS

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 156aa MW: 17755.4 Da PI: 9.1783

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Z2BGS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.3	6e-14	50	134	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY++Y+k +GFs+++++++++ ++i+++ vCs egk +++ + + +t+++ ++C ak+ v+ k g w + k++l+ +H + Araip.Z2BGS 50 KFYKNYSKLAGFSTKIRNTTRK--GDKIKNQLIVCSSEGKWKSNISP---TLKTNPSAGINCLAKIYVHILKdVGLWTIFKVVLNDSHLC 134 6**************98776..8889**********99877...999************98879********999965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.9E-11	50	135	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MNDSTLNQLN ESDLDYSSES YQADGSRCVM DEQFVPKVGM IFKTLEEVGK FYKNYSKLAG 60 FSTKIRNTTR KGDKIKNQLI VCSSEGKWKS NISPTLKTNP SAGINCLAKI YVHILKDVGL 120 WTIFKVVLND SHLCSPDRAE MLKQHRELSM FVHRTI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Z2BGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015945094.1	7e-85	protein FAR1-RELATED SEQUENCE 4-like
TrEMBL	A0A445CBX1	1e-105	A0A445CBX1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	9e-07	FAR1-related sequence 4