PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Z2VYZ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ERF

Protein Properties

Length: 227aa MW: 24604.4 Da PI: 5.659

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Z2VYZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.6	1.7e-19	43	93	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 sgy+GVr + +g+Wv+eIr+p++ r r++lg++ tae+Aa+a++aa+++++g Araip.Z2VYZ 43 SGYRGVRMRQ-WGKWVSEIREPKK---RNRIWLGTYATAEMAARAHDAAALAIKG 93 89***998.******966...48********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.31E-21	43	101	IPR016177	DNA-binding domain
Pfam	PF00847	1.3E-12	43	93	IPR001471	AP2/ERF domain
CDD	cd00018	5.87E-21	43	103	No hit	No description
PROSITE profile	PS51032	23.433	44	101	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-35	44	107	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-10	45	56	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-31	45	102	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-10	67	83	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MDVEPQKPLV SPIIVNSAAS SSSPDQSSPP PPKPPAKKRV AASGYRGVRM RQWGKWVSEI 60 REPKKRNRIW LGTYATAEMA ARAHDAAALA IKGRAAILNF PELGPHLPRP PTNSPKDIQA 120 AAAKAAALDY FPSHEAVANP SPIVSAASSS SSSSSSSHPK DNEESPNSSM DKEDDMFTDL 180 PDLIIDLDHG GRGSEFDYST RWLVNEADQL DSAFQLAEPF QWESVPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-17	45	101	15	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Z2VYZ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FM955398	0.0	FM955398.1 Arachis hypogaea mRNA for putative DREB transcription factor (DRE-binding domain gene), isolated from leaf.
GenBank	FM955401	0.0	FM955401.1 Arachis hypogaea mRNA for putative DREB transcription factor (DRE-binding domain gene), islated from root.
GenBank	FM955402	0.0	FM955402.1 Arachis hypogaea mRNA for putative DREB transcription factor (DRE-binding domain gene), isolated from stem.
GenBank	FM955403	0.0	FM955403.1 Arachis hypogaea mRNA for putative DREB transcription factor (DRE-binding domain gene), isolated from flower.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016201459.1	1e-163	ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	7e-45	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A444WUF9	1e-111	A0A444WUF9_ARAHY; Uncharacterized protein
STRING	EOY24281	1e-51	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	3e-28	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]