PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Z9FN3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 501aa    MW: 57273.8 Da    PI: 9.2488
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Z9FN3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.42.4e-1848134191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.Z9FN3  48 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKnVGAWIISKVVLDHSHPCCP 134
                  6****************98887..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1548134IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186288324IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4290321IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-4299326IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MDDSTSDCQL NPGEVNYEFE SDEPLSVVDD QLVPKGGMTF TTLEDAGKFY RNYAKAAGFS  60
TRVRSTNRKG NEIKNQLITC SREGKWKSKI SPTEKTNPTA GLNCPARIYI HTLKNVGAWI  120
ISKVVLDHSH PCCPSKAEML KQHRELSMSI RHLYEDRHIW VPIYLDHHFW AGMRSTQRSE  180
SMHSFFNKFI TQNSSLIQFV KQYDNCLRSR EQAERESDAA DFHTVILCAT KSSIEAQFQD  240
AYTHQKFRKV QAQFRGKENC ITRLKNSALG YSVYEVGEQV SSSIFNKFVV TYDSVAAEVK  300
CQCLLFESRG ILCRHALSVL SFEEVSQVSP RYILERWSKK VKRRHTHIKS SHDEPLMEPR  360
SKRFDQLVFR SQNICEFASE SEELTAILHR AYDNVMAEME SLKAKRKGTS SLSHEDANLE  420
YVNELQSPPR IRTRGRPKNR LGSKLDKQIA NATKKKKTKV LSEINLFDAA SAVHSNSSQY  480
QGHVMNYQFR VPAAGDNSLG V
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Z9FN3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-35far-red elongated hypocotyls 3