PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZD3PG
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 569aa    MW: 64138.1 Da    PI: 6.5617
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZD3PGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.95.4e-25117217198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+l++sd++++g +++ +k+a+e+       ++++++  +l+ +d +g +W++k+iyr++++r++lt+GW+ Fv a++L +gD++vF   + ++++
  Araip.ZD3PG 117 FCKTLSTSDTSTHGGFSVLRKHANEClpqldmtMENPTQ--ELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVAGDSFVFL--RGENGQ 210
                  99****************************987555544..8************************************************..448999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  Araip.ZD3PG 211 LRVGVRR 217
                  9****98 PP
2Auxin_resp63.76.9e-22243315183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+h++ t+++F v+Y+P+         ++k+ +++++ + +GmRfkm+ e+ed   +r+ Gt+vgv d ++ +WpnS+WrsLk
  Araip.ZD3PG 243 ASHSVMTSTMFVVYYKPS---------LNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIVGVGD-ESREWPNSQWRSLK 315
                  679999***********8.........59***************************************.888*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-38105244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-39109231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-21116217No hitNo description
PfamPF023622.9E-22117217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224117219IPR003340B3 DNA binding domain
SMARTSM010191.9E-23117219IPR003340B3 DNA binding domain
PfamPF065072.0E-20243315IPR010525Auxin response factor
SuperFamilySSF542771.57E-10480562No hitNo description
PfamPF023091.6E-6483522IPR033389AUX/IAA domain
PROSITE profilePS5174525.61486567IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MADGAGDDLF KELWRLCAGP LMDVPCVQDR VFYFPQGHIE LLPEPTEQEL RQMKNQKSPK  60
YDLPSKILCR VIDVKCLAEM ETDEVYARIT LQPSSDNDPL DPNPICSEKP KQKFYSFCKT  120
LSTSDTSTHG GFSVLRKHAN ECLPQLDMTM ENPTQELVAK DIHGVEWKFK HIYRGHPKRH  180
LLTTGWSAFV AAKKLVAGDS FVFLRGENGQ LRVGVRRLNP PQSPTPSSVV STQNMRLGVI  240
VTASHSVMTS TMFVVYYKPS LNKYIDTMNN DFKIGMRFKM RHEGEDPLDK RFCGTIVGVG  300
DESREWPNSQ WRSLKVQWDE PATMQRPDRV SCWEIEPLVT SPLNTIQPMA KGKRSRHAEA  360
SSSGSKESQV ATIWQPPHLN GNGNSSQDPE NNKAVVPVGP AGEGPARDHN EDRKKGMDCW  420
LFGVNLTSSY SNVVTPLEKE LWCEASTILH CGPKESIIVG ACETEKVQSL NNHSLSNKQG  480
HVPSMRTRTK VKMEGVAVGR AIDLTTLNGY DELIVELEKM FDIEGEIISQ KKWAVTFTDE  540
ENDLMLLGDD LWQDFCKMVK RIFICSKED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-134733817355Auxin response factor 1
4ldw_A1e-134733817355Auxin response factor 1
4ldw_B1e-134733817355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZD3PG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020970890.10.0auxin response factor 18-like isoform X3
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A445ACI50.0A0A445ACI5_ARAHY; Auxin response factor
STRINGGLYMA16G02650.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2363723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]