PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.ZD4VN

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 149aa MW: 17409.9 Da PI: 9.8736

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.ZD4VN	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.7	1.9e-31	18	70	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtpeLHe+Fveave+LGG++kAtPk+il+ m vkgL ++h+kSHLQ+YR Araip.ZD4VN 18 PRLRWTPELHEQFVEAVESLGGKHKATPKQILQQMAVKGLRIAHIKSHLQMYR 70 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.373	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-28	15	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-23	18	71	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.58E-14	18	71	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-9	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MRNWEKIGVR QYNKSELPRL RWTPELHEQF VEAVESLGGK HKATPKQILQ QMAVKGLRIA 60 HIKSHLQMYR NLKGHASLSV DHLMEEYQHV KDLKITSIPS PKRSSIVTNL RGSNYERRIP 120 MEDLHLSNGV SQISEETDYD LNQILRDSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-20	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-20	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-20	19	73	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	19	73	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	19	73	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	19	73	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-20	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-20	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-20	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-20	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-20	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-20	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.ZD4VN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025668960.1	1e-103	myb family transcription factor PHL13
TrEMBL	A0A444YEN0	1e-101	A0A444YEN0_ARAHY; Uncharacterized protein
STRING	GLYMA02G45231.1	7e-50	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9186	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	6e-27	G2-like family protein