PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.ZE5CU

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 537aa MW: 60717.1 Da PI: 4.3446

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.ZE5CU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.4e-05	322	360	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+ri +++++Lr+++P + k s Le ++Y++ L Araip.ZE5CU 322 RQRIQDCIQQLRTIIPGK---DVKECSIDNLLECSIRYMSFL 360 89**************98...666688888888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.645	309	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MDSKNYDLDE FFPSISFDCL YDPNPNNPSV FIYELDSLHE SQLLLSDIDH NNGLVLKCNG 60 SMKCVTDQDP LFDPLEEQVL SESALTSLCI MNNAMENQHS NQVIMAEADF PSNSEVSKNL 120 LERIDVSEEF LNFTSLDEIC QWFDASQEDN NSNTFPESMQ CDATSFSWKS VKDSYENCLL 180 GSMEPELNLI APVAMSSADD TASFECLSEF DFDALTGLLS DSSIEELLNC EEANCNNPLN 240 NGSSAVLELS SENNKMEMME NISNPMNFTK NLAWFQARNN LTQPVPDLDT ANKIKRKKEE 300 PKKPSKKKDK AGECSRPRPK DRQRIQDCIQ QLRTIIPGKD VKECSIDNLL ECSIRYMSFL 360 SSTAHYANKL QEPDKPKANG VVLQESSVEG SKHYGTWSFE EPHQTLLCPI IVEDMAHPGQ 420 MLIELLCEEE GFSLELVDTI KGLGLNILKA KMETRNRKLW ARFIANRHVT KIDVFWSLLH 480 LVEQKNSSRT GMDSSTNNNK HCNEMNDGSV SRLDKQQQEK ESCNFFMSMT EALSFSG

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MDSKNYDLDE FFPSISFDCL YDPNPNNPSV FIYELDSLHE SQLLLSDIDH NNGLVLKCNG  60
SMKCVTDQDP LFDPLEEQVL SESALTSLCI MNNAMENQHS NQVIMAEADF PSNSEVSKNL  120
LERIDVSEEF LNFTSLDEIC QWFDASQEDN NSNTFPESMQ CDATSFSWKS VKDSYENCLL  180
GSMEPELNLI APVAMSSADD TASFECLSEF DFDALTGLLS DSSIEELLNC EEANCNNPLN  240
NGSSAVLELS SENNKMEMME NISNPMNFTK NLAWFQARNN LTQPVPDLDT ANKIKRKKEE  300
PKKPSKKKDK AGECSRPRPK DRQRIQDCIQ QLRTIIPGKD VKECSIDNLL ECSIRYMSFL  360
SSTAHYANKL QEPDKPKANG VVLQESSVEG SKHYGTWSFE EPHQTLLCPI IVEDMAHPGQ  420
MLIELLCEEE GFSLELVDTI KGLGLNILKA KMETRNRKLW ARFIANRHVT KIDVFWSLLH  480
LVEQKNSSRT GMDSSTNNNK HCNEMNDGSV SRLDKQQQEK ESCNFFMSMT EALSFSG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.ZE5CU

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025616903.1	0.0	transcription factor LHW-like
TrEMBL	A0A444XP61	0.0	A0A444XP61_ARAHY; Uncharacterized protein
STRING	GLYMA10G31691.1	1e-101	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6955	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-28	conserved peptide upstream open reading frame 7