PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZEC5D
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 458aa    MW: 52645.7 Da    PI: 9.777
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZEC5DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.55.9e-108514991
         FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                 +++r+ ++ trt+C a+l+vk+++  g+w+v+ +++ HnH+l+p
  Araip.ZEC5D  8 DRSREAKSLTRTKCPARLRVKLDYgCGRWKVSFFVESHNHDLTP 51
                 56789999****************99***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-7851IPR004330FAR1 DNA binding domain
SMARTSM005750.0021176203IPR006564Zinc finger, PMZ-type
SuperFamilySSF577569.0E-7261294IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.104.9E-5270289IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.614275290IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MRYLDLDDRS REAKSLTRTK CPARLRVKLD YGCGRWKVSF FVESHNHDLT PPQFAHLVPA  60
NRRLTVIDKI QNTLIDFMHN LDRALKEYRN NELIADFKSQ CSEPVMITSL EVYERSASCY  120
FTRNIFKKIR NEIQRVGVLN IKVLSTTLDK VKFSVTALGD LAKDRRVEVD RGKNLFSCSC  180
KLFESRGISY SHVFCAMKFE NILEFPDSLI YKRWTKNAKN EFISTEMPVN DDVERSRKQG  240
NSTPNVNMEG INDLFVVKSK GAPSKRSSWR KKSACSNCHK YGHYYKRCPD LMQHIVEGNS  300
RDRSDGNASA KDSSFSPERF ANSSRSFSVK SEHHLGPKTR PFKKGGTRKF TATSMRNRKG  360
KDNTFDERSL HESSESIDIA SMNGFFNKNL YLLTQVKESQ QDKGHSFTNY ECVNDVMDEK  420
CDTPHVQIDV RDPLPSSMPC GNKQGSYMAL FASMHRTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZEC5D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025703006.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AWF20.0A0A445AWF2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-14FAR1-related sequence 5