PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZJ28C
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 404aa    MW: 45406.5 Da    PI: 8.264
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZJ28CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.57.6e-0751123191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk v Fs+r+++++k+                gk +++ +    +++ +++   +C a++ ++  k  g+w + k++l+H+H+ +p
  Araip.ZJ28C  51 KFYKDYAKAVSFSTRVRSTNKK----------------GKWKSKISL---TEKANPTAGLNCPARIYIHVLKdVGVWIILKVVLHHSHPYCP 123
                  6999999999999999887666................444444433...55678999***********98889**************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509668.605259295IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDDSTSDCQL NQGKVDFEFE SNEVLEPLYV VNDQFVPKVG MTFNTLEDAA KFYKDYAKAV  60
SFSTRVRSTN KKGKWKSKIS LTEKANPTAG LNCPARIYIH VLKDVGVWII LKVVLHHSHP  120
YCPDQAQMLK QHRELSMSVC RAIENNEEAS IRPSKTFQSF VAAAGAHLSN LSNNTIIASE  180
AGSKERESDA VDFHTVIPCA TKSSIEAQFQ HVYTHQKFRE VQAQFRGKTN CITRLMNFAL  240
GYSVYEVGEQ VSSSKFNKFA VTYDPVAAQV KCQCLLFESR GILCRHVLSK EVTHTHQEQP  300
RRATVGAKKQ EELTAILHRA YDNVMVEIEE LKAKWKGTCS LSHEDANLES SANASKKKKT  360
KALSELNLFD ATLVVQPNSS QYHGHIMNYQ FREPAAGDNP TVYV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZJ28C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-114HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020961120.11e-120protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445A4U90.0A0A445A4U9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.19e-09FAR1-related sequence 4