PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZMP4R
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 463aa    MW: 51234.5 Da    PI: 6.0182
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZMP4RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l  +++++G g+W++ +++ g+ R++k+c++rw +yl
      Araip.ZMP4R 14 KGPWTPEEDQKLMSYIEKHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.74e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l
      Araip.ZMP4R  67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAQLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.639961IPR017930Myb domain
SuperFamilySSF466892.02E-3011108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002491.7E-161461IPR001005SANT/Myb domain
CDDcd001674.47E-111661No hitNo description
PROSITE profilePS5129425.2962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2665116IPR009057Homeodomain-like
SMARTSM007174.9E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1567112IPR001005SANT/Myb domain
CDDcd001673.27E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDQKLMSYIE KHGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAQLPKRT DNEIKNYWNT HLKKRLTRMG  120
IDPTTHKPKT DPIGGGSDTN SSQSKDLANL SHMAQWENAR LEAEARLVRE SKLLLQVQQT  180
QQTNTTQPPP ARLVLNKITA AQQQPLLPPC LDVLKAWQNS WSSKPQLSVP SRENFKMHSM  240
YAMMLSTDEN LESPTSTLCF PGGASGSSAM LPIMSSTTTS ATTITVDALN ENLLNPSLTK  300
TKIDSNGTMV TPCDEGVFIT KGGNNNETDS SWYMLKQNNP EIELDDDEIV ENNNNNNNNS  360
FRDDDIMVAV EAFRGRGGGG YDGVNVVPPT LSSTGDVVVM EAGLICSSNN NNGDDDAHMP  420
YHSNDTLAII NDGDGSICNV SLEENKHYWN TILNLVNDAQ VMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZMP4R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193023.10.0myb-related protein 306-like
SwissprotQ9LE631e-102MY106_ARATH; Transcription factor MYB106
TrEMBLA0A445DNT10.0A0A445DNT1_ARAHY; Uncharacterized protein
STRINGGLYMA20G04240.21e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-98myb domain protein 16