PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZP5MJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 329aa    MW: 37132.9 Da    PI: 5.7458
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZP5MJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.87e-151865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
      Araip.ZP5MJ 18 KGLWSPEEDDKLMNYMMNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 65
                     678*******************************************97 PP
2Myb_DNA-binding47.44.4e-1571114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++ E++l+++ + +lG++ W+ Ia++++ gRt++++k++w++
      Araip.ZP5MJ  71 RGAFSPHEQQLIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 114
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-241168IPR009057Homeodomain-like
PROSITE profilePS5129416.1381365IPR017930Myb domain
SuperFamilySSF466891.56E-2716112IPR009057Homeodomain-like
SMARTSM007172.5E-101767IPR001005SANT/Myb domain
PfamPF002498.8E-141865IPR001005SANT/Myb domain
CDDcd001678.46E-92165No hitNo description
PROSITE profilePS5129423.82366120IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-2569121IPR009057Homeodomain-like
SMARTSM007171.8E-1470118IPR001005SANT/Myb domain
PfamPF002491.5E-1371114IPR001005SANT/Myb domain
CDDcd001673.98E-1073113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMITFEQSSS SKNNKLRKGL WSPEEDDKLM NYMMNNGQGC WSDVARNAGL QRCGKSCRLR  60
WINYLRPDLK RGAFSPHEQQ LIIHFHSLLG NRWSQIAARL PGRTDNEIKN FWNSTIKKRL  120
KQQSTTSPNA SDDHDYSSYD PNNNNNIVGG GEGFNSNSTT QQFHQHHLHL MPLVFNSSSS  180
SSSSSMQNTV LNTLIDRLPM LDHGLNIPAA NGFNNKGFYD LENGVIGSLD NNNNNNNINN  240
LVAEEVVVGD NTNTNTNTFS DHDNNLKVLE SANYFDDINS IVNSCNNNKI MKGGVVENLF  300
HEELTLGEWD LEEFMKDVTS FPFLADFSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261312022128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZP5MJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193161.10.0myb-related protein 330
RefseqXP_025642077.10.0transcription factor MYB83-like
TrEMBLA0A445A9960.0A0A445A996_ARAHY; Uncharacterized protein
STRINGXP_007132019.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-70myb domain protein 46