PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZW7RJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 378aa    MW: 42811 Da    PI: 9.4938
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZW7RJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.2e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++++G g W+t ++  g++R++k+c++rw +yl
      Araip.ZW7RJ 17 KGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYL 64
                     79********************************************97 PP
2Myb_DNA-binding55.11.7e-1770114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e ++++++ lG++ W+tIa+ ++ gRt++++k++w+++
      Araip.ZW7RJ  70 RGRFSFEEEEMIIQLHTVLGNK-WSTIAANLP-GRTDNEIKNYWNTH 114
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-251067IPR009057Homeodomain-like
PROSITE profilePS5129425.7981268IPR017930Myb domain
SuperFamilySSF466891.47E-3114111IPR009057Homeodomain-like
SMARTSM007172.0E-151666IPR001005SANT/Myb domain
PfamPF002493.4E-171764IPR001005SANT/Myb domain
CDDcd001674.94E-121964No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2668119IPR009057Homeodomain-like
PROSITE profilePS5129420.87569119IPR017930Myb domain
SMARTSM007179.9E-1669117IPR001005SANT/Myb domain
PfamPF002492.6E-1470114IPR001005SANT/Myb domain
CDDcd001675.42E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAKSCSSEKN NNNGLKKGPW TPEEDQKLID YIQKHGHGKW RTLPKNAGLK RCGKSCRLRW  60
ANYLRPDIKR GRFSFEEEEM IIQLHTVLGN KWSTIAANLP GRTDNEIKNY WNTHIKKKLL  120
KMGIDPITHT PRLDVLQLSS ILSSTLYNNN NSPQINNNYY PTLFGIGSSS VANNPSQVLS  180
LLASLLSYQS RNNDNILNQQ IRTELSPTEN NSNFSQKYFI QQNQLGTISP LLLQNQIHLN  240
PSQAFQPNQP CANNFHVETQ NMKSKLEPQI PFNHQNTLPN LWHYNGGGYM ANQQGFPSLL  300
ENNQILCREE IMANFNLMNS MLSTSTASSS SPSNLNSSSS TTFVNGTTTT EDERDSYGSN  360
MLMYKYNISN RLNNSGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31151195108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZW7RJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312011e-119KT031201.1 Glycine max clone HN_CCL_73 MYB/HD-like transcription factor (Glyma12g34650.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169335.10.0transcription factor MYB74-like isoform X1
RefseqXP_025673996.10.0transcription factor MYB41
TrEMBLA0A445BYG00.0A0A445BYG0_ARAHY; Uncharacterized protein
STRINGGLYMA13G35810.21e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151201013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-86MYB-like 102