PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZWZ8M
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 116aa    MW: 12673.5 Da    PI: 8.4914
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZWZ8MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.15e-46141131100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+CakdCv+apyfpa++p+kf  vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal++
  Araip.ZWZ8M  14 PCAACKLLRRRCAKDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLRTQLALAQ 111
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  Araip.ZWZ8M 112 AE 113
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.86113114IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-4514111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MKEGGGRKQG AMSPCAACKL LRRRCAKDCV FAPYFPADEP QKFGSVHKVF GASNVNKMLQ  60
ELPEHQRSDA VSSMVYEANA RVRDPVYGCV GAISSLQQQV DVLRTQLALA QAEVTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-50101147111LOB family transfactor Ramosa2.1
5ly0_B8e-50101147111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZWZ8M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025610551.11e-80LOB domain-containing protein 4
SwissprotQ9SHE96e-62LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A444Y0333e-79A0A444Y033_ARAHY; Uncharacterized protein
STRINGXP_010093051.18e-76(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-64LOB domain-containing protein 4