PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000005-PA
Common NameOsI_05433
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 141aa    MW: 15499.7 Da    PI: 9.6526
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000005-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-192458135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  BGIOSGA000005-PA 24 CADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRR 58
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.4E-161881IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7031854IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-121957No hitNo description
Gene3DG3DSA:3.30.50.101.5E-152258IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.45E-142358No hitNo description
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
PfamPF003202.1E-172458IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEMDSSSSPV DKVDPDECNG SKACADCHTT KTPLWRGGPG GPKSLCNACG IRYRKRRRAA  60
LGLDSAATAT EGAEQQQKKT KAKKEKAEEE EVTMELHTVG FRSKDAAVLK QRRRMRRRKC  120
LGEEERAAIL LMALSSGVIY A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357RKRRR
2110116QRRRMRR
3111118RRRMRRRK
4112117RRMRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.429410.0callus| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975984220.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416430.0AK241643.1 Oryza sativa Japonica Group cDNA, clone: J065189M03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641177.17e-76GATA transcription factor 16
TrEMBLA0A0E0FZN21e-98A0A0E0FZN2_ORYNI; Uncharacterized protein
TrEMBLB8AA851e-98B8AA85_ORYSI; Uncharacterized protein
STRINGONIVA01G52080.12e-99(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-25GATA transcription factor 16