PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA000170-PA

Common Name

OsI_05091

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YB

Protein Properties

Length: 194aa MW: 20589.8 Da PI: 8.8819

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA000170-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	143.6	4.6e-45	53	144	3	94
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 qd++lPianv+rimk lP +akisk aket+qec++efisfvt+eas++c+re+rkt+ngdd+++a+ +lG+++y+++++ yl++yre e BGIOSGA000170-PA 53 GQDNLLPIANVGRIMKDGLPPQAKISKRAKETIQECATEFISFVTGEASERCRRERRKTVNGDDVCHAMRSLGLDHYADAMHRYLQRYREGE 144 69***************************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.5E-42	50	148	IPR009072	Histone-fold
SuperFamily	SSF47113	2.64E-33	54	154	IPR009072	Histone-fold
Pfam	PF00808	4.9E-24	58	121	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.1E-14	85	103	No hit	No description
PROSITE pattern	PS00685	0	88	104	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.1E-14	104	122	No hit	No description
PRINTS	PR00615	4.1E-14	123	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSRDLNFSGF NQLGRLQPMQ GLPRASSSST SASRDRDGGD GDGGGGGVTM TNGQDNLLPI 60 ANVGRIMKDG LPPQAKISKR AKETIQECAT EFISFVTGEA SERCRRERRK TVNGDDVCHA 120 MRSLGLDHYA DAMHRYLQRY REGEELAASL NSSSSAAAAA AAAGGSRGGG AIQIDVRAEL 180 SIFRSGNNQG RPNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-38	54	142	4	92	Transcription factor HapC (Eurofung)
4g92_B	1e-38	54	142	4	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878241.1	1e-100	nuclear transcription factor Y subunit B-4
TrEMBL	B8A8T6	1e-139	B8A8T6_ORYSI; Uncharacterized protein
STRING	ORGLA01G0368600.1	1e-123	(Oryza glaberrima)
STRING	OBART01G43120.1	1e-123	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	7e-44	nuclear factor Y, subunit B4