PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000249-PA
Common NameOsI_04935
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 440aa    MW: 47923.3 Da    PI: 8.6646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000249-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-1082107227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C +++rtG C++G +C+F+H++
  BGIOSGA000249-PA  82 GEPDCTYYLRTGLCRFGMSCRFNHPQ 107
                       6899********************97 PP
2zf-CCCH38.91.4e-12127152227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++++tGtCk+G++CkF+H++
  BGIOSGA000249-PA 127 GQPECQYYLKTGTCKFGPTCKFHHPR 152
                       5799********************96 PP
3zf-CCCH37.15.1e-12174198327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C ++++tG+CkyG++CkF+H++
  BGIOSGA000249-PA 174 EKECAYYLKTGQCKYGNTCKFHHPE 198
                       679********************96 PP
4zf-CCCH39.31.1e-12335360227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++++tG Ck+G+ CkF+H++
  BGIOSGA000249-PA 335 DQPECQYYMKTGDCKFGAVCKFHHPR 360
                       689*********************96 PP
5zf-CCCH41.81.8e-13380405126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++elC+f++r+G+Ck+G++CkF H+
  BGIOSGA000249-PA 380 PGEELCKFYSRYGICKFGANCKFDHP 405
                       689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.5E-580107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.35280108IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-882107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-585108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-486107IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986125153IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10127152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6128154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5131153IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5171198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868171199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6172198IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9174198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5177197IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5333360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023333361IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9335360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4339359IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7379406IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413379407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6381406IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10381405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5383404IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDDAGRASAP AVVTVTASAA APTPPPPPPP PPPPPSQLPA TAAATDEPSH DPAALYGEGM  60
WQQMTMSGSG AMQPGPYPER SGEPDCTYYL RTGLCRFGMS CRFNHPQDRN LAIASARMKG  120
EYPERMGQPE CQYYLKTGTC KFGPTCKFHH PREKAGIAGR VQLNTLGYPL RPSEKECAYY  180
LKTGQCKYGN TCKFHHPELF NAMASSRGSP IYPSVHSSAT AGPPSYTGTM ASWAFPRGSF  240
IPSPRWQNPS NYAPMIVPQG LVQVPSWNSY TGQMMPVSSS ESRLQSPGAQ QTYGTSQQVD  300
ASAGNQGMLS PYRSSSYPVP QYALQRENVF PERPDQPECQ YYMKTGDCKF GAVCKFHHPR  360
VRSMPTPDCV LSPVGLPLRP GEELCKFYSR YGICKFGANC KFDHPTMAPP MGVYAYGSAS  420
TNVPMVRRLL QSPSASAYTS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.190860.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887650.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0989480.0AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622340.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0D3EXW20.0A0A0D3EXW2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FXM20.0A0A0E0FXM2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N6T30.0A0A0E0N6T3_ORYRU; Uncharacterized protein
TrEMBLA2WYD10.0A2WYD1_ORYSI; Uncharacterized protein
STRINGORUFI01G45190.10.0(Oryza rufipogon)
STRINGONIVA01G46980.10.0(Oryza nivara)
STRINGOBART01G41830.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-147zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]