PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000297-PA
Common NameOsI_04843
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 369aa    MW: 39814.2 Da    PI: 6.2201
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000297-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.51.1e-10961150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeys 50
                      k ien+ +r+ tf +Rr g+  K +   +LC++e+++i +++    g++ +++
  BGIOSGA000297-PA  9 KLIENEKKRKATFKNRRDGLKQKVSQFATLCGVEALLICVAPAvagGEVTTWP 61
                      569*************************************9854448888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.88E-15180IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-8162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.325149IPR002100Transcription factor, MADS-box
CDDcd002665.34E-17381No hitNo description
PfamPF003197.2E-141160IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MPRTKLVLKL IENEKKRKAT FKNRRDGLKQ KVSQFATLCG VEALLICVAP AVAGGEVTTW  60
PPDRAAVLDL IARLRETPPE KIRQLHNTQS LLRDDLDKQQ RLLLKVQKCG ADDVLTPWHC  120
SLYDLSLDGL NALHDTLSET LDRAHRRIAA LGGGHGHVHD DAASSSEFSV PAPAPHAVAL  180
PDNAFDFPFA PSNTGPVVGA HYFYPLHDTL PLPLPLPQQV PGQHPPCIAY QMPPPPCLAY  240
QMPPPPPPSL AAAPFDQCMS ATGFMDSNPY ATHIMHGGST AAGLLDDHGQ IFSARAGYDD  300
DDILGHGFGF AAGTGYDLDP RMATADVWPM NTLNNIPNDG GIGFQLQNDL KWMLPGGSNG  360
SNLQGGFQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8A7U20.0B8A7U2_ORYSI; Uncharacterized protein
STRINGONIVA01G46080.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-12M-type_MADS family protein