PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000617-PA
Common NameOsI_04167
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 275aa    MW: 30431.2 Da    PI: 9.4553
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000617-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.62.6e-151811739127
               NAM  39 iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevlsk..kgelvglkktLvfy.........kgrapkgekt 119
                       i ++ P   +    ++e +wy Fs+r++ky++gkr++r+t   g+Wk+t k+++vl++  ++ l+g k  L+++         k +++++ kt
  BGIOSGA000617-PA  18 ISSTMPAASK-LGPSREGNWYMFSPRNRKYNKGKRPSRSTGqLGFWKSTTKNEAVLDAlsDNMLIGYKACLTYHeydesmptpKLKKENAIKT 109
                       5555554433.22345669*******************66538*************99888889**********8887777766899999*** PP

               NAM 120 dWvmheyr 127
                        W m e+ 
  BGIOSGA000617-PA 110 PWKMWEFV 117
                       ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.9991145IPR003441NAC domain
SuperFamilySSF1019412.35E-2230145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAESSESAWP QQSQQLQISS TMPAASKLGP SREGNWYMFS PRNRKYNKGK RPSRSTGQLG  60
FWKSTTKNEA VLDALSDNML IGYKACLTYH EYDESMPTPK LKKENAIKTP WKMWEFVCSN  120
SNRPFDAEEE PMRLNDWVLC KVTNKDNKVT TKKFKPQRSK KPKKPKKLQQ EEQPQNQGIV  180
IRQPSESGSA SSSHQEIPGS SLPGAGGDAA AAAATAAAAV DPMPLHMIPP SSWNYFSTGV  240
TADGIVMDDS TGVDSYGCVD GAGALNFQRN IFYHR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639570.11e-122protein ATAF2
TrEMBLA2WW850.0A2WW85_ORYSI; Uncharacterized protein
STRINGORUFI01G38010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-14NAC domain containing protein 2