PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000873-PA
Common NameOsI_03623
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 304aa    MW: 31562 Da    PI: 4.9538
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000873-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-3079137259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers++dp++v++tY+ eHnh+
  BGIOSGA000873-PA  79 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRNDPDTVIVTYSFEHNHS 137
                       69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.20473139IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.2E-3175137IPR003657WRKY domain
SuperFamilySSF1182907.72E-2676137IPR003657WRKY domain
SMARTSM007742.9E-3678138IPR003657WRKY domain
PfamPF031063.4E-2680136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSGGGGREQM KGGEDVAAAD CPGSPVSPSP AAAQRSAAGA AASPSGRSRR SAQKRVVTVP  60
LADVTGPRPK GVGEGNTPTD SWAWRKYGQK PIKGSPFPRA YYRCSSSKGC PARKQVERSR  120
NDPDTVIVTY SFEHNHSATV PRAQNRQAAP QKPKAQACSP PEPVVEVEPE ETHQYGVTAG  180
PATGGGGGAA AIEVRDEFRW LYDVVSVPAS STSPSDIDAA DEMQLYDQPM FFGGAVVGTA  240
ALLPDEFGDV GGLGGEGLGE EEALFEGLGE LPECAMVFRR RAGDGLAMGG GVKIEQPAES  300
TAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17801361671WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.59410.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329949790.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097700.0AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence.
GenBankAY8706030.0AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624912.10.0probable WRKY transcription factor 65
TrEMBLA0A0D9YEJ70.0A0A0D9YEJ7_9ORYZ; Uncharacterized protein
TrEMBLA2WUR80.0A2WUR8_ORYSI; Uncharacterized protein
STRINGOGLUM01G33860.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-37WRKY DNA-binding protein 65