PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000921-PA
Common NameOsI_03498
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 232aa    MW: 24527.2 Da    PI: 7.9803
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000921-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-30146204159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg Hnh 
  BGIOSGA000921-PA 146 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKNDPRYVVTTYEGIHNHV 204
                       59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-32133204IPR003657WRKY domain
SuperFamilySSF1182906.02E-27139205IPR003657WRKY domain
PROSITE profilePS5081131.846141206IPR003657WRKY domain
SMARTSM007745.5E-34146205IPR003657WRKY domain
PfamPF031066.4E-24147203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAAAAAGAST PFSFCRHGSH AEYDDAVFSG SWMARRPSAA PHGGGASGSS FGAAFRQQHL  60
DLLDYLSDDQ GVPAPPPPAA VPSASYVTPA PAMGPAEPVV PDAVAAAGGG YPRSVAAAAA  120
AVAGEGRDRT MTDKIAFRTR SDDEILDDGY KWRKYGKKSV KNSPNPRNYY RCSTEGCNVK  180
KRVERDKNDP RYVVTTYEGI HNHVCPGTVY YAAQDAASGR FFVAGISHPD LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24136206777Probable WRKY transcription factor 4
2lex_A1e-24136206777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.306340.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329937640.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085550.0AK108555.1 Oryza sativa Japonica Group cDNA clone:002-144-E10, full insert sequence.
GenBankAY8706090.0AY870609.1 Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635650.11e-108WRKY transcription factor WRKY24
TrEMBLB8A8N81e-168B8A8N8_ORYSI; Uncharacterized protein
TrEMBLQ6IEM21e-168Q6IEM2_ORYSI; WRKY transcription factor 59
STRINGONIVA01G32840.11e-115(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.14e-36WRKY DNA-binding protein 50