PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001076-PA
Common NameOsI_03154
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 242aa    MW: 24948.8 Da    PI: 7.0078
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001076-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20124158135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  BGIOSGA001076-PA 124 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 158
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-15117159No hitNo description
SMARTSM004014.4E-21118175IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-17118158IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011414.404118154IPR000679Zinc finger, GATA-type
CDDcd002021.43E-13123155No hitNo description
PfamPF003205.5E-18124158IPR000679Zinc finger, GATA-type
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFPAGAP GDHHHHHYYK QYCGAGDGEY PDVPYGGGGS  60
VDCTLSLGTP STRRAEAAVA GLPWDQSSLQ PSCNGRQEMS GAAAPRTEPS GGAGAAAASA  120
PRRCANCDTT STPLWRNGPR GPKSLCNACG IRYKKEERRA AAAAVAPTAL ASDGGVEYAY  180
GYPRQQQQWG CYGPAVAKAA SFGMFGDAAG EDGPCLPWGL GVMPSSPAFG AVREMPSLFQ  240
YY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1019600.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638887.11e-174GATA transcription factor 20
TrEMBLA0A0D9YCS41e-174A0A0D9YCS4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FQK21e-174A0A0E0FQK2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N0B21e-174A0A0E0N0B2_ORYRU; Uncharacterized protein
TrEMBLA2WTH11e-174A2WTH1_ORYSI; Uncharacterized protein
STRINGOGLUM01G29320.11e-174(Oryza glumipatula)
STRINGORUFI01G28370.11e-174(Oryza rufipogon)
STRINGONIVA01G28750.11e-174(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-26GATA transcription factor 20