PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001090-PA
Common NameOsI_03129
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 269aa    MW: 28641.4 Da    PI: 4.2221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001090-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.5e-2071121155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ +++a+ +l+g
  BGIOSGA001090-PA  71 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDNAAIQLRG 121
                       69********.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1271121IPR001471AP2/ERF domain
CDDcd000183.17E-3071131No hitNo description
SMARTSM003807.8E-3772135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-3072130IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-2272131IPR016177DNA-binding domain
PROSITE profilePS5103223.02472129IPR001471AP2/ERF domain
PRINTSPR003672.0E-107384IPR001471AP2/ERF domain
PRINTSPR003672.0E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDLTDSS GEDEGCGGRR VGSMCSGGDG DMGRRVVGGG CTVGVGRRRL  60
TKDGGPGAPS TKFRGVRRRP WGKFAAEIRD PWRGVRVWLG TFDTAEEAAR VYDNAAIQLR  120
GPSATTNFSA STNSAGAQDP VAVGYESGAE SSPAVSSPTS VLRKVPSLCS LAEDKDDYEA  180
GPCEPATAAG SNLTVLEEEE LGEFVPFEDA PVYGGSSFWD FEPESGFLYA EPSSPETPWD  240
AGATSSGEAQ DYFQDLRDLF PLNPLPAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2265133776Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.384220.0callus| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO334400210.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032940.0AP003294.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0694A04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3393770.0AY339377.1 Oryza sativa (japonica cultivar-group) Ap24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635207.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLA2WTE50.0A2WTE5_ORYSI; Uncharacterized protein
STRINGORUFI01G28060.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.16e-25cytokinin response factor 1